Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
The establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-...
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2023-01-01
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| Series: | Frontiers in Marine Science |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fmars.2022.1014361/full |
| _version_ | 1797959734650732544 |
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| author | Miguel Baltazar-Soares André R. A. Lima Gonçalo Silva Elie Gaget |
| author_facet | Miguel Baltazar-Soares André R. A. Lima Gonçalo Silva Elie Gaget |
| author_sort | Miguel Baltazar-Soares |
| collection | DOAJ |
| description | The establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted sub-populations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential. |
| first_indexed | 2024-04-11T00:37:00Z |
| format | Article |
| id | doaj.art-6c47a435d86b484c9278e61216fa01ff |
| institution | Directory Open Access Journal |
| issn | 2296-7745 |
| language | English |
| last_indexed | 2024-04-11T00:37:00Z |
| publishDate | 2023-01-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Marine Science |
| spelling | doaj.art-6c47a435d86b484c9278e61216fa01ff2023-01-06T17:10:06ZengFrontiers Media S.A.Frontiers in Marine Science2296-77452023-01-01910.3389/fmars.2022.10143611014361Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modellingMiguel Baltazar-Soares0André R. A. Lima1Gonçalo Silva2Elie Gaget3Department of Biology, University of Turku, Turku, FinlandMARE–Marine and Environmental Sciences Centre, ARNET–Aquatic Research Network, ISPA – Instituto Universitário de Ciências Psicológicas, Lisboa, PortugalMARE–Marine and Environmental Sciences Centre, ARNET–Aquatic Research Network, ISPA – Instituto Universitário de Ciências Psicológicas, Lisboa, PortugalDepartment of Biology, University of Turku, Turku, FinlandThe establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted sub-populations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.https://www.frontiersin.org/articles/10.3389/fmars.2022.1014361/fullhigh-throughput sequencinggenomicsspecies distribution model (SDMs)fisheries applicationsevolutionary ecology |
| spellingShingle | Miguel Baltazar-Soares André R. A. Lima Gonçalo Silva Elie Gaget Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling Frontiers in Marine Science high-throughput sequencing genomics species distribution model (SDMs) fisheries applications evolutionary ecology |
| title | Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling |
| title_full | Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling |
| title_fullStr | Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling |
| title_full_unstemmed | Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling |
| title_short | Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling |
| title_sort | towards a unified eco evolutionary framework for fisheries management coupling advances in next generation sequencing with species distribution modelling |
| topic | high-throughput sequencing genomics species distribution model (SDMs) fisheries applications evolutionary ecology |
| url | https://www.frontiersin.org/articles/10.3389/fmars.2022.1014361/full |
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