The complete chloroplast genome of Actinidia rubus (Actinidiaceae)
A complete chloroplast genome of Actinidia rubus, an endemic shrub in China, was sequenced and identified. The length of genome is 156,573 bp, and the GC content is 37.3%. This genome contains a large single copy (LSC; 88,473 bp) region, a small single copy (SSC; 20,492) region, a pair of inverted r...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1703571 |
| _version_ | 1797639498298818560 |
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| author | Yu-Sheng Xu Cheng-Gui Zhang Jun-Tong Chen Li-Juan Li Chuan-Jiang Liao Zhen-Yu Lv Zhi-Lin Jiang |
| author_facet | Yu-Sheng Xu Cheng-Gui Zhang Jun-Tong Chen Li-Juan Li Chuan-Jiang Liao Zhen-Yu Lv Zhi-Lin Jiang |
| author_sort | Yu-Sheng Xu |
| collection | DOAJ |
| description | A complete chloroplast genome of Actinidia rubus, an endemic shrub in China, was sequenced and identified. The length of genome is 156,573 bp, and the GC content is 37.3%. This genome contains a large single copy (LSC; 88,473 bp) region, a small single copy (SSC; 20,492) region, a pair of inverted repeat (IR; 23,804) regions. A total of 113 unique genes were identified, including 78 protein-coding genes, 31 tRNA genes and 4 rRNA genes. The phylogenetic analysis based on complete chloroplast genome of 10 species showed that Actintdia eriantha was sister to A. rubus. |
| first_indexed | 2024-03-11T13:18:37Z |
| format | Article |
| id | doaj.art-6ccdf75030314ff180ee0df17b9c3ee6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:37Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6ccdf75030314ff180ee0df17b9c3ee62023-11-03T11:00:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015136636710.1080/23802359.2019.17035711703571The complete chloroplast genome of Actinidia rubus (Actinidiaceae)Yu-Sheng Xu0Cheng-Gui Zhang1Jun-Tong Chen2Li-Juan Li3Chuan-Jiang Liao4Zhen-Yu Lv5Zhi-Lin Jiang6Institute of Entomoceutics Research, National-Local Joint Engineering Research Center of Entomoceutics, Dali UniversityInstitute of Entomoceutics Research, National-Local Joint Engineering Research Center of Entomoceutics, Dali UniversityKey Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of SciencesKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of SciencesInstitute of Entomoceutics Research, National-Local Joint Engineering Research Center of Entomoceutics, Dali UniversitySchool of Life Sciences, Yunnan Normal UniversityInstitute of Agricultural and Garden Technology, Puer UniversityA complete chloroplast genome of Actinidia rubus, an endemic shrub in China, was sequenced and identified. The length of genome is 156,573 bp, and the GC content is 37.3%. This genome contains a large single copy (LSC; 88,473 bp) region, a small single copy (SSC; 20,492) region, a pair of inverted repeat (IR; 23,804) regions. A total of 113 unique genes were identified, including 78 protein-coding genes, 31 tRNA genes and 4 rRNA genes. The phylogenetic analysis based on complete chloroplast genome of 10 species showed that Actintdia eriantha was sister to A. rubus.http://dx.doi.org/10.1080/23802359.2019.1703571actinidia rubuschloroplast genomephylogenetic analysis |
| spellingShingle | Yu-Sheng Xu Cheng-Gui Zhang Jun-Tong Chen Li-Juan Li Chuan-Jiang Liao Zhen-Yu Lv Zhi-Lin Jiang The complete chloroplast genome of Actinidia rubus (Actinidiaceae) Mitochondrial DNA. Part B. Resources actinidia rubus chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Actinidia rubus (Actinidiaceae) |
| title_full | The complete chloroplast genome of Actinidia rubus (Actinidiaceae) |
| title_fullStr | The complete chloroplast genome of Actinidia rubus (Actinidiaceae) |
| title_full_unstemmed | The complete chloroplast genome of Actinidia rubus (Actinidiaceae) |
| title_short | The complete chloroplast genome of Actinidia rubus (Actinidiaceae) |
| title_sort | complete chloroplast genome of actinidia rubus actinidiaceae |
| topic | actinidia rubus chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1703571 |
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