High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

Single-cell proteomics is an emerging technology but protein coverage, throughput and quantitation accuracy are often still insufficient. Here, the authors develop a nested nanowell chip that improves protein recovery, throughput and robustness of isobaric labeling-based quantitative single-cell pro...

Full description

Bibliographic Details
Main Authors: Jongmin Woo, Sarah M. Williams, Lye Meng Markillie, Song Feng, Chai-Feng Tsai, Victor Aguilera-Vazquez, Ryan L. Sontag, Ronald J. Moore, Dehong Hu, Hardeep S. Mehta, Joshua Cantlon-Bruce, Tao Liu, Joshua N. Adkins, Richard D. Smith, Geremy C. Clair, Ljiljana Pasa-Tolic, Ying Zhu
Format: Article
Language:English
Published: Nature Portfolio 2021-10-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-021-26514-2
_version_ 1819024895356436480
author Jongmin Woo
Sarah M. Williams
Lye Meng Markillie
Song Feng
Chai-Feng Tsai
Victor Aguilera-Vazquez
Ryan L. Sontag
Ronald J. Moore
Dehong Hu
Hardeep S. Mehta
Joshua Cantlon-Bruce
Tao Liu
Joshua N. Adkins
Richard D. Smith
Geremy C. Clair
Ljiljana Pasa-Tolic
Ying Zhu
author_facet Jongmin Woo
Sarah M. Williams
Lye Meng Markillie
Song Feng
Chai-Feng Tsai
Victor Aguilera-Vazquez
Ryan L. Sontag
Ronald J. Moore
Dehong Hu
Hardeep S. Mehta
Joshua Cantlon-Bruce
Tao Liu
Joshua N. Adkins
Richard D. Smith
Geremy C. Clair
Ljiljana Pasa-Tolic
Ying Zhu
author_sort Jongmin Woo
collection DOAJ
description Single-cell proteomics is an emerging technology but protein coverage, throughput and quantitation accuracy are often still insufficient. Here, the authors develop a nested nanowell chip that improves protein recovery, throughput and robustness of isobaric labeling-based quantitative single-cell proteomics.
first_indexed 2024-12-21T05:02:03Z
format Article
id doaj.art-6d95da1c95fe4f8f92f03a0bae481111
institution Directory Open Access Journal
issn 2041-1723
language English
last_indexed 2024-12-21T05:02:03Z
publishDate 2021-10-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj.art-6d95da1c95fe4f8f92f03a0bae4811112022-12-21T19:15:13ZengNature PortfolioNature Communications2041-17232021-10-0112111110.1038/s41467-021-26514-2High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chipJongmin Woo0Sarah M. Williams1Lye Meng Markillie2Song Feng3Chai-Feng Tsai4Victor Aguilera-Vazquez5Ryan L. Sontag6Ronald J. Moore7Dehong Hu8Hardeep S. Mehta9Joshua Cantlon-Bruce10Tao Liu11Joshua N. Adkins12Richard D. Smith13Geremy C. Clair14Ljiljana Pasa-Tolic15Ying Zhu16Environmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryScienion AGBiological Sciences Division, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryBiological Sciences Division, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratoryEnvironmental Molecular Sciences Laboratory, Pacific Northwest National LaboratorySingle-cell proteomics is an emerging technology but protein coverage, throughput and quantitation accuracy are often still insufficient. Here, the authors develop a nested nanowell chip that improves protein recovery, throughput and robustness of isobaric labeling-based quantitative single-cell proteomics.https://doi.org/10.1038/s41467-021-26514-2
spellingShingle Jongmin Woo
Sarah M. Williams
Lye Meng Markillie
Song Feng
Chai-Feng Tsai
Victor Aguilera-Vazquez
Ryan L. Sontag
Ronald J. Moore
Dehong Hu
Hardeep S. Mehta
Joshua Cantlon-Bruce
Tao Liu
Joshua N. Adkins
Richard D. Smith
Geremy C. Clair
Ljiljana Pasa-Tolic
Ying Zhu
High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
Nature Communications
title High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
title_full High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
title_fullStr High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
title_full_unstemmed High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
title_short High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
title_sort high throughput and high efficiency sample preparation for single cell proteomics using a nested nanowell chip
url https://doi.org/10.1038/s41467-021-26514-2
work_keys_str_mv AT jongminwoo highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT sarahmwilliams highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT lyemengmarkillie highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT songfeng highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT chaifengtsai highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT victoraguileravazquez highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT ryanlsontag highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT ronaldjmoore highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT dehonghu highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT hardeepsmehta highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT joshuacantlonbruce highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT taoliu highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT joshuanadkins highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT richarddsmith highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT geremycclair highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT ljiljanapasatolic highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip
AT yingzhu highthroughputandhighefficiencysamplepreparationforsinglecellproteomicsusinganestednanowellchip