Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species
The Amomum genus comprises of perennial, tropical, herbaceous plants that are distributed globally and possess both medicinal and ornamental properties. These plants contain a variety of secondary metabolites, including compounds with antioxidant and antimicrobial properties. This is the first trans...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-10-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340923006078 |
| _version_ | 1797660447187402752 |
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| author | Fathmath Shaman Fareed Sam Yen Yen Nallammai Singaram |
| author_facet | Fathmath Shaman Fareed Sam Yen Yen Nallammai Singaram |
| author_sort | Fathmath Shaman Fareed |
| collection | DOAJ |
| description | The Amomum genus comprises of perennial, tropical, herbaceous plants that are distributed globally and possess both medicinal and ornamental properties. These plants contain a variety of secondary metabolites, including compounds with antioxidant and antimicrobial properties. This is the first transcriptomic analysis of seven Amomum species from Peninsular Malaysia, utilizing leaves, stems, and roots as sample material. Paired-end Illumina HiSeq technology was used for data generation which includes raw data, cleaned reads, de novo assembly, and functional annotation. The data is accessible via NCBI BioProject (PRJNA936673). |
| first_indexed | 2024-03-11T18:30:58Z |
| format | Article |
| id | doaj.art-6deeac4562744dbc8ece1e242c937e53 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-03-11T18:30:58Z |
| publishDate | 2023-10-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-6deeac4562744dbc8ece1e242c937e532023-10-13T11:04:52ZengElsevierData in Brief2352-34092023-10-0150109507Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. speciesFathmath Shaman Fareed0Sam Yen Yen1Nallammai Singaram2School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, MalaysiaForest Research Institute, Kepong, 52109, Kuala Lumpur, Selangor, MalaysiaSchool of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia; Corresponding author.The Amomum genus comprises of perennial, tropical, herbaceous plants that are distributed globally and possess both medicinal and ornamental properties. These plants contain a variety of secondary metabolites, including compounds with antioxidant and antimicrobial properties. This is the first transcriptomic analysis of seven Amomum species from Peninsular Malaysia, utilizing leaves, stems, and roots as sample material. Paired-end Illumina HiSeq technology was used for data generation which includes raw data, cleaned reads, de novo assembly, and functional annotation. The data is accessible via NCBI BioProject (PRJNA936673).http://www.sciencedirect.com/science/article/pii/S2352340923006078AmomumPeninsular MalaysiaRNATranscriptome dataDe novo assembly |
| spellingShingle | Fathmath Shaman Fareed Sam Yen Yen Nallammai Singaram Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species Data in Brief Amomum Peninsular Malaysia RNA Transcriptome data De novo assembly |
| title | Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species |
| title_full | Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species |
| title_fullStr | Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species |
| title_full_unstemmed | Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species |
| title_short | Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species |
| title_sort | data of de novo assembly and functional annotation of transcriptome of peninsular malaysian amomum roxb species |
| topic | Amomum Peninsular Malaysia RNA Transcriptome data De novo assembly |
| url | http://www.sciencedirect.com/science/article/pii/S2352340923006078 |
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