The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae)
AbstractCyperus malaccensis Lam is a perennial herbaceous plant that is distributed over a large area along the southern coast of China. Some plants of the Cyperaceae family are highly similar morphologically, which makes them difficult to classify and identify. In this study, the complete chloropla...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2024-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2305413 |
| _version_ | 1827308523598381056 |
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| author | Lianghao Pan Kun Chen Xin Liao |
| author_facet | Lianghao Pan Kun Chen Xin Liao |
| author_sort | Lianghao Pan |
| collection | DOAJ |
| description | AbstractCyperus malaccensis Lam is a perennial herbaceous plant that is distributed over a large area along the southern coast of China. Some plants of the Cyperaceae family are highly similar morphologically, which makes them difficult to classify and identify. In this study, the complete chloroplast genome of C. malaccensis was sequenced and assembled. The chloroplast genome is 186,098 bp long with a 33.18% content of GC. The structure of chloroplast genome includes a quadripartite structure that is composed of a pair of inverted repeats (IRs) of 37,434 bp, a small single copy (SSC) region of 10,296 bp, and a large single copy (LSC) region of 100,934 bp. The genome contains 141 genes, including 94 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that C. malaccensis is the most closely related to the congeneric species C. rotundus. These results enrich the genetic resources of the Cyperaceae and provide a molecular basis for further study on the phylogeny of this family. |
| first_indexed | 2024-03-08T09:05:34Z |
| format | Article |
| id | doaj.art-6e2878f2511444c69c8e97194fae8ed6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:10:44Z |
| publishDate | 2024-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6e2878f2511444c69c8e97194fae8ed62024-03-26T11:18:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-01-019111411810.1080/23802359.2024.2305413The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae)Lianghao Pan0Kun Chen1Xin Liao2Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Marine Sciences, Beihai, ChinaGuangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Marine Sciences, Beihai, ChinaGuangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Marine Sciences, Beihai, ChinaAbstractCyperus malaccensis Lam is a perennial herbaceous plant that is distributed over a large area along the southern coast of China. Some plants of the Cyperaceae family are highly similar morphologically, which makes them difficult to classify and identify. In this study, the complete chloroplast genome of C. malaccensis was sequenced and assembled. The chloroplast genome is 186,098 bp long with a 33.18% content of GC. The structure of chloroplast genome includes a quadripartite structure that is composed of a pair of inverted repeats (IRs) of 37,434 bp, a small single copy (SSC) region of 10,296 bp, and a large single copy (LSC) region of 100,934 bp. The genome contains 141 genes, including 94 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that C. malaccensis is the most closely related to the congeneric species C. rotundus. These results enrich the genetic resources of the Cyperaceae and provide a molecular basis for further study on the phylogeny of this family.https://www.tandfonline.com/doi/10.1080/23802359.2024.2305413Cyperus malaccensis Lamcomplete chloroplast genomephylogenetic analysisCyperaceae |
| spellingShingle | Lianghao Pan Kun Chen Xin Liao The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) Mitochondrial DNA. Part B. Resources Cyperus malaccensis Lam complete chloroplast genome phylogenetic analysis Cyperaceae |
| title | The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) |
| title_full | The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) |
| title_fullStr | The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) |
| title_full_unstemmed | The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) |
| title_short | The complete chloroplast genome and phylogenetic analysis of Cyperus malaccensis Lam (Cyperaceae) |
| title_sort | complete chloroplast genome and phylogenetic analysis of cyperus malaccensis lam cyperaceae |
| topic | Cyperus malaccensis Lam complete chloroplast genome phylogenetic analysis Cyperaceae |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2305413 |
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