Characterization of the complete chloroplast genome of Lonicera macranthoides
Lonicera macranthoides is an important Chinese traditional medicine plant which is endemic in southwest China. The complete chloroplast genome from L. macranthoides is determined in this study. The genome size was 154,897 bp, containing a large single copy (LSC) region of 88,692 bp and a small singl...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1507643 |
| _version_ | 1797640618359390208 |
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| author | Huan Hu Jianguo Liu Jiaxing An Miao Wang Qian Wang |
| author_facet | Huan Hu Jianguo Liu Jiaxing An Miao Wang Qian Wang |
| author_sort | Huan Hu |
| collection | DOAJ |
| description | Lonicera macranthoides is an important Chinese traditional medicine plant which is endemic in southwest China. The complete chloroplast genome from L. macranthoides is determined in this study. The genome size was 154,897 bp, containing a large single copy (LSC) region of 88,692 bp and a small single copy (SSC) region of 18,623 bp, which were separated by a pair of 23,786 bp inverted repeat (IR) regions. The plastome contained 130 genes, including 81 protein-coding genes (77 PCG species), eight ribosomal RNA genes (4 rRNA species), 39 tRNA genes (29 tRNA species) and two pseudognes. The most of gene species occurred as a single copy, while 13 gene species occurred in double copies, including all rRNA species, six tRNA species and three PCG species, and two tRNA genes occur in treble copies. Finally, phylogenetic analysis demonstrated that L. macranthoides is closely related to L. japonica, and genus Lonicera shows a closer relationship with Triostrum for the current data. |
| first_indexed | 2024-03-11T13:34:25Z |
| format | Article |
| id | doaj.art-6e7cf7c4053440fc9ce7b3d6f6b1f1ee |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:25Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6e7cf7c4053440fc9ce7b3d6f6b1f1ee2023-11-02T15:57:26ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-01321000100110.1080/23802359.2018.15076431507643Characterization of the complete chloroplast genome of Lonicera macranthoidesHuan Hu0Jianguo Liu1Jiaxing An2Miao Wang3Qian Wang4Research Center for Medicine and Biology, Zunyi Medical UniversityResearch Center for Medicine and Biology, Zunyi Medical UniversityAffiliated Hospital, Zunyi Medical UniversityResearch Center for Medicine and Biology, Zunyi Medical UniversityResearch Center for Medicine and Biology, Zunyi Medical UniversityLonicera macranthoides is an important Chinese traditional medicine plant which is endemic in southwest China. The complete chloroplast genome from L. macranthoides is determined in this study. The genome size was 154,897 bp, containing a large single copy (LSC) region of 88,692 bp and a small single copy (SSC) region of 18,623 bp, which were separated by a pair of 23,786 bp inverted repeat (IR) regions. The plastome contained 130 genes, including 81 protein-coding genes (77 PCG species), eight ribosomal RNA genes (4 rRNA species), 39 tRNA genes (29 tRNA species) and two pseudognes. The most of gene species occurred as a single copy, while 13 gene species occurred in double copies, including all rRNA species, six tRNA species and three PCG species, and two tRNA genes occur in treble copies. Finally, phylogenetic analysis demonstrated that L. macranthoides is closely related to L. japonica, and genus Lonicera shows a closer relationship with Triostrum for the current data.http://dx.doi.org/10.1080/23802359.2018.1507643chloroplast genomelonicera macranthoidescaprifoliaceaephylogenetic analysis |
| spellingShingle | Huan Hu Jianguo Liu Jiaxing An Miao Wang Qian Wang Characterization of the complete chloroplast genome of Lonicera macranthoides Mitochondrial DNA. Part B. Resources chloroplast genome lonicera macranthoides caprifoliaceae phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Lonicera macranthoides |
| title_full | Characterization of the complete chloroplast genome of Lonicera macranthoides |
| title_fullStr | Characterization of the complete chloroplast genome of Lonicera macranthoides |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Lonicera macranthoides |
| title_short | Characterization of the complete chloroplast genome of Lonicera macranthoides |
| title_sort | characterization of the complete chloroplast genome of lonicera macranthoides |
| topic | chloroplast genome lonicera macranthoides caprifoliaceae phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1507643 |
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