Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b)
Meningitis infection is one of the major threats during Hajj season in Mecca. Meningitis vaccines are available, but their uses are limited in some countries due to religious reasons. Furthermore, they only give protection to certain serogroups, not to all types of meningitis-inducing bacteria. Rece...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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AboutScience Srl
2016-01-01
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| Series: | Drug Target Insights |
| Online Access: | https://doi.org/10.4137/DTI.S38458 |
| _version_ | 1818153864858173440 |
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| author | Hilyatuz Zahroh Ahmad Ma'rup Usman Sumo Friend Tambunan Aril Aditya Parikesit |
| author_facet | Hilyatuz Zahroh Ahmad Ma'rup Usman Sumo Friend Tambunan Aril Aditya Parikesit |
| author_sort | Hilyatuz Zahroh |
| collection | DOAJ |
| description | Meningitis infection is one of the major threats during Hajj season in Mecca. Meningitis vaccines are available, but their uses are limited in some countries due to religious reasons. Furthermore, they only give protection to certain serogroups, not to all types of meningitis-inducing bacteria. Recently, research on epitope-based vaccines has been developed intensively. Such vaccines have potential advantages over conventional vaccines in that they are safer to use and well responded to the antibody. In this study, we developed epitope-based vaccine candidates against various meningitis-inducing bacteria, including Streptococcus pneumoniae, Neisseria meningitidis , and Haemophilus influenzae type b. The epitopes were selected from their protein of polysaccharide capsule. B-cell epitopes were predicted by using BCPred, while T-cell epitope for major histocompatibility complex (MHC) class I was predicted using PAProC, TAPPred, and Immune Epitope Database. Immune Epitope Database was also used to predict T-cell epitope for MHC class II. Population coverage and molecular docking simulation were predicted against previously generated epitope vaccine candidates. The best candidates for MHC class I- and class II-restricted T-cell epitopes were MQYGDKTTF, MKEQNTLEI, ECTEGEPDY, DLSIVVPIY, YPMAMMWRNASNRAI, TLQMTLLGIVPNLNK, ETSLHHIPGISNYFI, and SLLYILEKNAEMEFD, which showed 80% population coverage. The complexes of class I T-cell epitopes-HLA-C * 03:03 and class II T-cell epitopes-HLA-DRB1 * 11:01 showed better affinity than standards as evaluated from their δ G binding value and the binding interaction between epitopes and HLA molecules. These peptide constructs may further be undergone in vitro and in vivo testings for the development of targeted vaccine against meningitis infection. |
| first_indexed | 2024-12-11T14:17:24Z |
| format | Article |
| id | doaj.art-6eb78827b43249ee9923805e3e625efb |
| institution | Directory Open Access Journal |
| issn | 1177-3928 |
| language | English |
| last_indexed | 2024-12-11T14:17:24Z |
| publishDate | 2016-01-01 |
| publisher | AboutScience Srl |
| record_format | Article |
| series | Drug Target Insights |
| spelling | doaj.art-6eb78827b43249ee9923805e3e625efb2022-12-22T01:03:05ZengAboutScience SrlDrug Target Insights1177-39282016-01-011010.4137/DTI.S38458Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b)Hilyatuz Zahroh0Ahmad Ma'rup1Usman Sumo Friend Tambunan2Aril Aditya Parikesit3Genetic Research Center, University of YARSI, Indonesia.Department of Chemistry, Universitas Islam Negeri Syarif Hidayatullah, Indonesia.Bioinformatics Research Group, Department of Chemistry, Faculty of Mathematics and Science, University of Indonesia, Indonesia.Bioinformatics Research Group, Department of Chemistry, Faculty of Mathematics and Science, University of Indonesia, Indonesia.Meningitis infection is one of the major threats during Hajj season in Mecca. Meningitis vaccines are available, but their uses are limited in some countries due to religious reasons. Furthermore, they only give protection to certain serogroups, not to all types of meningitis-inducing bacteria. Recently, research on epitope-based vaccines has been developed intensively. Such vaccines have potential advantages over conventional vaccines in that they are safer to use and well responded to the antibody. In this study, we developed epitope-based vaccine candidates against various meningitis-inducing bacteria, including Streptococcus pneumoniae, Neisseria meningitidis , and Haemophilus influenzae type b. The epitopes were selected from their protein of polysaccharide capsule. B-cell epitopes were predicted by using BCPred, while T-cell epitope for major histocompatibility complex (MHC) class I was predicted using PAProC, TAPPred, and Immune Epitope Database. Immune Epitope Database was also used to predict T-cell epitope for MHC class II. Population coverage and molecular docking simulation were predicted against previously generated epitope vaccine candidates. The best candidates for MHC class I- and class II-restricted T-cell epitopes were MQYGDKTTF, MKEQNTLEI, ECTEGEPDY, DLSIVVPIY, YPMAMMWRNASNRAI, TLQMTLLGIVPNLNK, ETSLHHIPGISNYFI, and SLLYILEKNAEMEFD, which showed 80% population coverage. The complexes of class I T-cell epitopes-HLA-C * 03:03 and class II T-cell epitopes-HLA-DRB1 * 11:01 showed better affinity than standards as evaluated from their δ G binding value and the binding interaction between epitopes and HLA molecules. These peptide constructs may further be undergone in vitro and in vivo testings for the development of targeted vaccine against meningitis infection.https://doi.org/10.4137/DTI.S38458 |
| spellingShingle | Hilyatuz Zahroh Ahmad Ma'rup Usman Sumo Friend Tambunan Aril Aditya Parikesit Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) Drug Target Insights |
| title | Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) |
| title_full | Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) |
| title_fullStr | Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) |
| title_full_unstemmed | Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) |
| title_short | Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (, and Type b) |
| title_sort | immunoinformatics approach in designing epitope based vaccine against meningitis inducing bacteria and type b |
| url | https://doi.org/10.4137/DTI.S38458 |
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