An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells
<p>Abstract</p> <p>Background</p> <p>The sex hormone estrogen (E2) is pivotal to normal mammary gland growth and differentiation and in breast carcinogenesis. In this <it>in silico </it>study, we examined metabolic differences between ER(+)ve breast cancer c...
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| Format: | Article |
| Language: | English |
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BMC
2007-09-01
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| Series: | BMC Cancer |
| Online Access: | http://www.biomedcentral.com/1471-2407/7/181 |
| _version_ | 1819138403219800064 |
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| author | Davie James R Mandal Soma |
| author_facet | Davie James R Mandal Soma |
| author_sort | Davie James R |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>The sex hormone estrogen (E2) is pivotal to normal mammary gland growth and differentiation and in breast carcinogenesis. In this <it>in silico </it>study, we examined metabolic differences between ER(+)ve breast cancer cells during E2 deprivation.</p> <p>Methods</p> <p>Public repositories of SAGE and MA gene expression data generated from E2 deprived ER(+)ve breast cancer cell lines, MCF-7 and ZR75-1 were compared with normal breast tissue. We analyzed gene ontology (GO), enrichment, clustering, chromosome localization, and pathway profiles and performed multiple comparisons with cell lines and tumors with different ER status.</p> <p>Results</p> <p>In all GO terms, biological process (BP), molecular function (MF), and cellular component (CC), MCF-7 had higher gene utilization than ZR75-1. Various analyses showed a down-regulated immune function, an up-regulated protein (ZR75-1) and glucose metabolism (MCF-7). A greater percentage of 77 common genes localized to the q arm of all chromosomes, but in ZR75-1 chromosomes 11, 16, and 19 harbored more overexpressed genes. Despite differences in gene utilization (electron transport, proteasome, glycolysis/gluconeogenesis) and expression (ribosome) in both cells, there was an overall similarity of ZR75-1 with ER(-)ve cell lines and ER(+)ve/ER(-)ve breast tumors.</p> <p>Conclusion</p> <p>This study demonstrates integral metabolic differences may exist within the same cell subtype (luminal A) in representative ER(+)ve cell line models. Selectivity of gene and pathway usage for strategies such as energy requirement minimization, sugar utilization by ZR75-1 contrasted with MCF-7 cells, expressing genes whose protein products require ATP utilization. Such characteristics may impart aggressiveness to ZR75-1 and may be prognostic determinants of ER(+)ve breast tumors.</p> |
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| format | Article |
| id | doaj.art-6f242e7348f84d628a9e8b107967f4a7 |
| institution | Directory Open Access Journal |
| issn | 1471-2407 |
| language | English |
| last_indexed | 2024-12-22T11:06:13Z |
| publishDate | 2007-09-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Cancer |
| spelling | doaj.art-6f242e7348f84d628a9e8b107967f4a72022-12-21T18:28:19ZengBMCBMC Cancer1471-24072007-09-017118110.1186/1471-2407-7-181An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cellsDavie James RMandal Soma<p>Abstract</p> <p>Background</p> <p>The sex hormone estrogen (E2) is pivotal to normal mammary gland growth and differentiation and in breast carcinogenesis. In this <it>in silico </it>study, we examined metabolic differences between ER(+)ve breast cancer cells during E2 deprivation.</p> <p>Methods</p> <p>Public repositories of SAGE and MA gene expression data generated from E2 deprived ER(+)ve breast cancer cell lines, MCF-7 and ZR75-1 were compared with normal breast tissue. We analyzed gene ontology (GO), enrichment, clustering, chromosome localization, and pathway profiles and performed multiple comparisons with cell lines and tumors with different ER status.</p> <p>Results</p> <p>In all GO terms, biological process (BP), molecular function (MF), and cellular component (CC), MCF-7 had higher gene utilization than ZR75-1. Various analyses showed a down-regulated immune function, an up-regulated protein (ZR75-1) and glucose metabolism (MCF-7). A greater percentage of 77 common genes localized to the q arm of all chromosomes, but in ZR75-1 chromosomes 11, 16, and 19 harbored more overexpressed genes. Despite differences in gene utilization (electron transport, proteasome, glycolysis/gluconeogenesis) and expression (ribosome) in both cells, there was an overall similarity of ZR75-1 with ER(-)ve cell lines and ER(+)ve/ER(-)ve breast tumors.</p> <p>Conclusion</p> <p>This study demonstrates integral metabolic differences may exist within the same cell subtype (luminal A) in representative ER(+)ve cell line models. Selectivity of gene and pathway usage for strategies such as energy requirement minimization, sugar utilization by ZR75-1 contrasted with MCF-7 cells, expressing genes whose protein products require ATP utilization. Such characteristics may impart aggressiveness to ZR75-1 and may be prognostic determinants of ER(+)ve breast tumors.</p>http://www.biomedcentral.com/1471-2407/7/181 |
| spellingShingle | Davie James R Mandal Soma An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells BMC Cancer |
| title | An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| title_full | An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| title_fullStr | An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| title_full_unstemmed | An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| title_short | An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| title_sort | integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells |
| url | http://www.biomedcentral.com/1471-2407/7/181 |
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