The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae)
Bolivia is believed to be the origin of the Capsicum eximium, a wild chilli pepper. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. eximium to investigate its phylogenetic relationship in the family Solanaceae. The complete cp genome sequence is 156,947 bp in length w...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1601533 |
| _version_ | 1797639858471043072 |
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| author | Raveendar Sebastin Kyung Jun Lee Gyu-Taek Cho Myoung-Jae Shin Seong-Hoon Kim Do Yoon Hyun Jung-Ro Lee |
| author_facet | Raveendar Sebastin Kyung Jun Lee Gyu-Taek Cho Myoung-Jae Shin Seong-Hoon Kim Do Yoon Hyun Jung-Ro Lee |
| author_sort | Raveendar Sebastin |
| collection | DOAJ |
| description | Bolivia is believed to be the origin of the Capsicum eximium, a wild chilli pepper. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. eximium to investigate its phylogenetic relationship in the family Solanaceae. The complete cp genome sequence is 156,947 bp in length with 37.7% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (25,847 bp) separated by a small single-copy region (17,912 bp) and a large single-copy region (87,341 bp). The cp genome contains 113 unique genes, including 79 protein coding genes, 30 tRNA genes, and 4 rRNA genes. Of these, 21 genes are duplicated in the inverted repeat regions. The phylogenetic analysis indicated C. eximium is clustered in the Capsicum clade. |
| first_indexed | 2024-03-11T13:23:36Z |
| format | Article |
| id | doaj.art-6f9f0c084db84f3d9dc2c706d4ad3fa8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:36Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6f9f0c084db84f3d9dc2c706d4ad3fa82023-11-03T10:06:44ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411634163510.1080/23802359.2019.16015331601533The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae)Raveendar Sebastin0Kyung Jun Lee1Gyu-Taek Cho2Myoung-Jae Shin3Seong-Hoon Kim4Do Yoon Hyun5Jung-Ro Lee6National Institute of Agricultural SciencesNational Institute of Agricultural SciencesNational Institute of Agricultural SciencesNational Institute of Agricultural SciencesNational Institute of Agricultural SciencesNational Institute of Agricultural SciencesNational Institute of Agricultural SciencesBolivia is believed to be the origin of the Capsicum eximium, a wild chilli pepper. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. eximium to investigate its phylogenetic relationship in the family Solanaceae. The complete cp genome sequence is 156,947 bp in length with 37.7% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (25,847 bp) separated by a small single-copy region (17,912 bp) and a large single-copy region (87,341 bp). The cp genome contains 113 unique genes, including 79 protein coding genes, 30 tRNA genes, and 4 rRNA genes. Of these, 21 genes are duplicated in the inverted repeat regions. The phylogenetic analysis indicated C. eximium is clustered in the Capsicum clade.http://dx.doi.org/10.1080/23802359.2019.1601533capsicum eximiumchloroplastillumina sequencingwild chilli pepper |
| spellingShingle | Raveendar Sebastin Kyung Jun Lee Gyu-Taek Cho Myoung-Jae Shin Seong-Hoon Kim Do Yoon Hyun Jung-Ro Lee The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) Mitochondrial DNA. Part B. Resources capsicum eximium chloroplast illumina sequencing wild chilli pepper |
| title | The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) |
| title_full | The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) |
| title_fullStr | The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) |
| title_short | The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum eximium Hunz. (Solanaceae) |
| title_sort | complete chloroplast genome sequence of a bolivian wild chili pepper capsicum eximium hunz solanaceae |
| topic | capsicum eximium chloroplast illumina sequencing wild chilli pepper |
| url | http://dx.doi.org/10.1080/23802359.2019.1601533 |
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