Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to...
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Elsevier
2020-08-01
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Series: | Data in Brief |
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Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340920306259 |
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author | Lan-Anh Le Thien-Phuc Nguyen-Hoang Van-Phuc Huynh Tan-Huy Nguyen Thuy-Vy Nguyen Thuy-Duong Ho-Huynh |
author_facet | Lan-Anh Le Thien-Phuc Nguyen-Hoang Van-Phuc Huynh Tan-Huy Nguyen Thuy-Vy Nguyen Thuy-Duong Ho-Huynh |
author_sort | Lan-Anh Le |
collection | DOAJ |
description | Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to increased emergence of drug resistant pathogens [3]. Current practices for water quality control, mostly based on chemical and physical parameters; neglected biological criteria necessary for maintaining pond health.Ninh Thuan is a region situated in the South Central Coast of Vietnam. Due to its geographic location, a large part of this region is dedicated to shrimp (Litopenaeus vannamei) post-larvae production and rearing. This article presents a microbiome dataset from two water samples collected in a shrimp rearing pond in Ninh Thuan. We used Oxford Nanopore Technologies (ONT) for metagenomic sequencing of the samples to characterize microbial communities and antibiotic resistance profiles. The metagenome dataset generated will provide an understanding and comparison framework of the microbial diversity and functionality among shrimp ponds with potential application in health management and shrimp rearing industry. |
first_indexed | 2024-12-21T12:03:43Z |
format | Article |
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institution | Directory Open Access Journal |
issn | 2352-3409 |
language | English |
last_indexed | 2024-12-21T12:03:43Z |
publishDate | 2020-08-01 |
publisher | Elsevier |
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series | Data in Brief |
spelling | doaj.art-6fd786ee0622494794deb506833cbc582022-12-21T19:04:45ZengElsevierData in Brief2352-34092020-08-0131105731Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomicsLan-Anh Le0Thien-Phuc Nguyen-Hoang1Van-Phuc Huynh2Tan-Huy Nguyen3Thuy-Vy Nguyen4Thuy-Duong Ho-Huynh5Khoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamDepartment of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamDepartment of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, Vietnam; Department of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, Vietnam; Research Center for Genetics and Reproductive Health, School of Medicine, VNU-HCM, 6 Residential area, Linh Trung, Thu Duc, Ho Chi Minh, Vietnam; Corresponding author.Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to increased emergence of drug resistant pathogens [3]. Current practices for water quality control, mostly based on chemical and physical parameters; neglected biological criteria necessary for maintaining pond health.Ninh Thuan is a region situated in the South Central Coast of Vietnam. Due to its geographic location, a large part of this region is dedicated to shrimp (Litopenaeus vannamei) post-larvae production and rearing. This article presents a microbiome dataset from two water samples collected in a shrimp rearing pond in Ninh Thuan. We used Oxford Nanopore Technologies (ONT) for metagenomic sequencing of the samples to characterize microbial communities and antibiotic resistance profiles. The metagenome dataset generated will provide an understanding and comparison framework of the microbial diversity and functionality among shrimp ponds with potential application in health management and shrimp rearing industry.http://www.sciencedirect.com/science/article/pii/S2352340920306259MetagenomicsShotgun sequencingOxford Nanopore MinION sequencingAquacultureShrimp pond |
spellingShingle | Lan-Anh Le Thien-Phuc Nguyen-Hoang Van-Phuc Huynh Tan-Huy Nguyen Thuy-Vy Nguyen Thuy-Duong Ho-Huynh Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics Data in Brief Metagenomics Shotgun sequencing Oxford Nanopore MinION sequencing Aquaculture Shrimp pond |
title | Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics |
title_full | Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics |
title_fullStr | Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics |
title_full_unstemmed | Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics |
title_short | Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics |
title_sort | microbiome dataset analysis from a shrimp pond in ninh thuan vietnam using shotgun metagenomics |
topic | Metagenomics Shotgun sequencing Oxford Nanopore MinION sequencing Aquaculture Shrimp pond |
url | http://www.sciencedirect.com/science/article/pii/S2352340920306259 |
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