Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics

Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to...

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Main Authors: Lan-Anh Le, Thien-Phuc Nguyen-Hoang, Van-Phuc Huynh, Tan-Huy Nguyen, Thuy-Vy Nguyen, Thuy-Duong Ho-Huynh
Format: Article
Language:English
Published: Elsevier 2020-08-01
Series:Data in Brief
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2352340920306259
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author Lan-Anh Le
Thien-Phuc Nguyen-Hoang
Van-Phuc Huynh
Tan-Huy Nguyen
Thuy-Vy Nguyen
Thuy-Duong Ho-Huynh
author_facet Lan-Anh Le
Thien-Phuc Nguyen-Hoang
Van-Phuc Huynh
Tan-Huy Nguyen
Thuy-Vy Nguyen
Thuy-Duong Ho-Huynh
author_sort Lan-Anh Le
collection DOAJ
description Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to increased emergence of drug resistant pathogens [3]. Current practices for water quality control, mostly based on chemical and physical parameters; neglected biological criteria necessary for maintaining pond health.Ninh Thuan is a region situated in the South Central Coast of Vietnam. Due to its geographic location, a large part of this region is dedicated to shrimp (Litopenaeus vannamei) post-larvae production and rearing. This article presents a microbiome dataset from two water samples collected in a shrimp rearing pond in Ninh Thuan. We used Oxford Nanopore Technologies (ONT) for metagenomic sequencing of the samples to characterize microbial communities and antibiotic resistance profiles. The metagenome dataset generated will provide an understanding and comparison framework of the microbial diversity and functionality among shrimp ponds with potential application in health management and shrimp rearing industry.
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spelling doaj.art-6fd786ee0622494794deb506833cbc582022-12-21T19:04:45ZengElsevierData in Brief2352-34092020-08-0131105731Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomicsLan-Anh Le0Thien-Phuc Nguyen-Hoang1Van-Phuc Huynh2Tan-Huy Nguyen3Thuy-Vy Nguyen4Thuy-Duong Ho-Huynh5Khoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamDepartment of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, VietnamDepartment of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, VietnamKhoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, Vietnam; Department of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, Vietnam; Research Center for Genetics and Reproductive Health, School of Medicine, VNU-HCM, 6 Residential area, Linh Trung, Thu Duc, Ho Chi Minh, Vietnam; Corresponding author.Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to increased emergence of drug resistant pathogens [3]. Current practices for water quality control, mostly based on chemical and physical parameters; neglected biological criteria necessary for maintaining pond health.Ninh Thuan is a region situated in the South Central Coast of Vietnam. Due to its geographic location, a large part of this region is dedicated to shrimp (Litopenaeus vannamei) post-larvae production and rearing. This article presents a microbiome dataset from two water samples collected in a shrimp rearing pond in Ninh Thuan. We used Oxford Nanopore Technologies (ONT) for metagenomic sequencing of the samples to characterize microbial communities and antibiotic resistance profiles. The metagenome dataset generated will provide an understanding and comparison framework of the microbial diversity and functionality among shrimp ponds with potential application in health management and shrimp rearing industry.http://www.sciencedirect.com/science/article/pii/S2352340920306259MetagenomicsShotgun sequencingOxford Nanopore MinION sequencingAquacultureShrimp pond
spellingShingle Lan-Anh Le
Thien-Phuc Nguyen-Hoang
Van-Phuc Huynh
Tan-Huy Nguyen
Thuy-Vy Nguyen
Thuy-Duong Ho-Huynh
Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
Data in Brief
Metagenomics
Shotgun sequencing
Oxford Nanopore MinION sequencing
Aquaculture
Shrimp pond
title Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
title_full Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
title_fullStr Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
title_full_unstemmed Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
title_short Microbiome dataset analysis from a shrimp pond in Ninh Thuan, Vietnam using shotgun metagenomics
title_sort microbiome dataset analysis from a shrimp pond in ninh thuan vietnam using shotgun metagenomics
topic Metagenomics
Shotgun sequencing
Oxford Nanopore MinION sequencing
Aquaculture
Shrimp pond
url http://www.sciencedirect.com/science/article/pii/S2352340920306259
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