The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan
Holly (Ilex L.) is a woody dioecious genus cultivated as pharmaceutical, ornamentals, and industrial materials. Ilex suaveolens (H. Lév.) Loes is an endemic medicinal holly with a predominant distribution in Mount Huangshan, China. In the present work, the complete plastid genome of I. suaveolens wa...
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| Format: | Article |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1872428 |
| _version_ | 1797639008795230208 |
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| author | Lige Yuan Han Wu Can Zhang Ying Wang Qi Huang Shiming Fan Tao Su |
| author_facet | Lige Yuan Han Wu Can Zhang Ying Wang Qi Huang Shiming Fan Tao Su |
| author_sort | Lige Yuan |
| collection | DOAJ |
| description | Holly (Ilex L.) is a woody dioecious genus cultivated as pharmaceutical, ornamentals, and industrial materials. Ilex suaveolens (H. Lév.) Loes is an endemic medicinal holly with a predominant distribution in Mount Huangshan, China. In the present work, the complete plastid genome of I. suaveolens was de novo sequenced by high-throughput sequencing technology. The newly-assembled plastid genome holds 37.6% of the overall GC content and a length of 157,857 bp, comprising a large single-copy (LSC, 87,255 bp), a small single-copy (SSC, 18,398 bp), and a pair of inverted repeat (IRs, 26,102 bp) regions. The plastid genome annotation suggested the presence of a total of 89 protein-encoding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The plastome-mediated phylogenetic topology revealed that I. suaveolens clustered together with I. szechwanenesis and I. viridis in the same clade, and a strong relationship between clades and biogeography was found. These data contribute to the understanding of genetic diversity and conservation study of Ilex in Mount Huangshan. |
| first_indexed | 2024-03-11T13:10:35Z |
| format | Article |
| id | doaj.art-7004135d8bc04de7ad88e68a0ae4aa51 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:35Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-7004135d8bc04de7ad88e68a0ae4aa512023-11-03T14:08:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016246846910.1080/23802359.2021.18724281872428The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount HuangshanLige Yuan0Han Wu1Can Zhang2Ying Wang3Qi Huang4Shiming Fan5Tao Su6Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry UniversityHolly (Ilex L.) is a woody dioecious genus cultivated as pharmaceutical, ornamentals, and industrial materials. Ilex suaveolens (H. Lév.) Loes is an endemic medicinal holly with a predominant distribution in Mount Huangshan, China. In the present work, the complete plastid genome of I. suaveolens was de novo sequenced by high-throughput sequencing technology. The newly-assembled plastid genome holds 37.6% of the overall GC content and a length of 157,857 bp, comprising a large single-copy (LSC, 87,255 bp), a small single-copy (SSC, 18,398 bp), and a pair of inverted repeat (IRs, 26,102 bp) regions. The plastid genome annotation suggested the presence of a total of 89 protein-encoding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The plastome-mediated phylogenetic topology revealed that I. suaveolens clustered together with I. szechwanenesis and I. viridis in the same clade, and a strong relationship between clades and biogeography was found. These data contribute to the understanding of genetic diversity and conservation study of Ilex in Mount Huangshan.http://dx.doi.org/10.1080/23802359.2021.1872428ilex suaveolensplastid genomephylogenetic analysisgenetic diversityconservation |
| spellingShingle | Lige Yuan Han Wu Can Zhang Ying Wang Qi Huang Shiming Fan Tao Su The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan Mitochondrial DNA. Part B. Resources ilex suaveolens plastid genome phylogenetic analysis genetic diversity conservation |
| title | The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan |
| title_full | The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan |
| title_fullStr | The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan |
| title_full_unstemmed | The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan |
| title_short | The complete plastid genome sequence of Ilex suaveolens (H. Lév.) Loes, the most abundant medicinal holly in Mount Huangshan |
| title_sort | complete plastid genome sequence of ilex suaveolens h lev loes the most abundant medicinal holly in mount huangshan |
| topic | ilex suaveolens plastid genome phylogenetic analysis genetic diversity conservation |
| url | http://dx.doi.org/10.1080/23802359.2021.1872428 |
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