The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)

Dipterocarpaceae are one of the economically most important native tree families for timber production in tropical Asia. We report the complete chloroplast genome of Vatica odorata (Griff.) Symington, the first in the family Dipterocarpaceae. The chloroplast genome was 151,465 bp in length, with a l...

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Main Authors: Tijana Cvetković, Damien Daniel Hinsinger, Joeri Sergej Strijk
Format: Article
Language:English
Published: Taylor & Francis Group 2017-01-01
Series:Mitochondrial DNA. Part B. Resources
Subjects:
Online Access:http://dx.doi.org/10.1080/23802359.2016.1275837
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author Tijana Cvetković
Damien Daniel Hinsinger
Joeri Sergej Strijk
author_facet Tijana Cvetković
Damien Daniel Hinsinger
Joeri Sergej Strijk
author_sort Tijana Cvetković
collection DOAJ
description Dipterocarpaceae are one of the economically most important native tree families for timber production in tropical Asia. We report the complete chloroplast genome of Vatica odorata (Griff.) Symington, the first in the family Dipterocarpaceae. The chloroplast genome was 151,465 bp in length, with a large single-copy (LSC) region of 83,538 bp and a small single-copy (SSC) region of 20,095 bp, separated by two inverted repeat (IRs) regions of 23,916 bp. It contained 126 genes, including 90 coding genes, 30 tRNA genes, and 8 rRNA genes. The overall GC content was 37.2%, and 43.1%, 35.2%, and 33.3% in the IRs, LSC and SSC regions, respectively. A phylogenetic tree showed Vatica accumulated more variation when compared with Tilia, and that internal relationships in Malvales need to be reassessed.
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spelling doaj.art-7019c18bd2ac4bbc8e99e39ea7cdaa9e2023-11-02T15:42:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-0121525310.1080/23802359.2016.12758371275837The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)Tijana Cvetković0Damien Daniel Hinsinger1Joeri Sergej Strijk2College of ForestryCollege of ForestryCollege of ForestryDipterocarpaceae are one of the economically most important native tree families for timber production in tropical Asia. We report the complete chloroplast genome of Vatica odorata (Griff.) Symington, the first in the family Dipterocarpaceae. The chloroplast genome was 151,465 bp in length, with a large single-copy (LSC) region of 83,538 bp and a small single-copy (SSC) region of 20,095 bp, separated by two inverted repeat (IRs) regions of 23,916 bp. It contained 126 genes, including 90 coding genes, 30 tRNA genes, and 8 rRNA genes. The overall GC content was 37.2%, and 43.1%, 35.2%, and 33.3% in the IRs, LSC and SSC regions, respectively. A phylogenetic tree showed Vatica accumulated more variation when compared with Tilia, and that internal relationships in Malvales need to be reassessed.http://dx.doi.org/10.1080/23802359.2016.1275837dipterocarpaceaecomplete chloroplast genomevatica odoratamalvalestropical hardwood
spellingShingle Tijana Cvetković
Damien Daniel Hinsinger
Joeri Sergej Strijk
The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
Mitochondrial DNA. Part B. Resources
dipterocarpaceae
complete chloroplast genome
vatica odorata
malvales
tropical hardwood
title The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
title_full The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
title_fullStr The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
title_full_unstemmed The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
title_short The first complete chloroplast sequence of a major tropical timber tree in the Meranti family: Vatica odorata (Dipterocarpaceae)
title_sort first complete chloroplast sequence of a major tropical timber tree in the meranti family vatica odorata dipterocarpaceae
topic dipterocarpaceae
complete chloroplast genome
vatica odorata
malvales
tropical hardwood
url http://dx.doi.org/10.1080/23802359.2016.1275837
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