Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress
Leucine-rich repeat receptor-like kinases (LRR-RLKs) can participate in the regulation of plant growth and development, immunity and signal transduction. Sesamum indicum, one of the most important oil crops, has a significant role in promoting human health. In this study, 175 SiLRR-RLK genes were id...
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| Format: | Article |
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Frontiers Media S.A.
2024-02-01
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| Series: | Frontiers in Plant Science |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2024.1334189/full |
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| author | Wenqing Yan Wenqing Yan Yunxia Ni Yunxia Ni Hui Zhao Hui Zhao Xintao Liu Min Jia Xinbei Zhao Yongdong Li Hongmei Miao Hongmei Miao Hongyan Liu Hongyan Liu Hongyan Liu Haiyang Zhang Haiyang Zhang |
| author_facet | Wenqing Yan Wenqing Yan Yunxia Ni Yunxia Ni Hui Zhao Hui Zhao Xintao Liu Min Jia Xinbei Zhao Yongdong Li Hongmei Miao Hongmei Miao Hongyan Liu Hongyan Liu Hongyan Liu Haiyang Zhang Haiyang Zhang |
| author_sort | Wenqing Yan |
| collection | DOAJ |
| description | Leucine-rich repeat receptor-like kinases (LRR-RLKs) can participate in the regulation of plant growth and development, immunity and signal transduction. Sesamum indicum, one of the most important oil crops, has a significant role in promoting human health. In this study, 175 SiLRR-RLK genes were identified in S. indicum, and they were subdivided into 12 subfamilies by phylogenetic analysis. Gene duplication analysis showed that the expansion of the SiLRR-RLK family members in the sesame was mainly due to segmental duplication. Moreover, the gene expansion of subfamilies IV and III contributed to the perception of stimuli under M. phaseolina stress in the sesame. The collinearity analysis with other plant species revealed that the duplication of SiLRR-RLK genes occurred after the differentiation of dicotyledons and monocotyledons. The expression profile analysis and functional annotation of SiLRR-RLK genes indicated that they play a vital role in biotic stress. Furthermore, the protein−protein interaction and coexpression networks suggested that SiLRR-RLKs contributed to sesame resistance to Macrophomina phaseolina by acting alone or as a polymer with other SiLRR-RLKs. In conclusion, the comprehensive analysis of the SiLRR-RLK gene family provided a framework for further functional studies on SiLRR-RLK genes. |
| first_indexed | 2024-03-08T03:24:26Z |
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| id | doaj.art-7032401f3a34417c8e6c4e066ef27a7f |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-03-08T03:24:26Z |
| publishDate | 2024-02-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-7032401f3a34417c8e6c4e066ef27a7f2024-02-12T04:43:08ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2024-02-011510.3389/fpls.2024.13341891334189Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stressWenqing Yan0Wenqing Yan1Yunxia Ni2Yunxia Ni3Hui Zhao4Hui Zhao5Xintao Liu6Min Jia7Xinbei Zhao8Yongdong Li9Hongmei Miao10Hongmei Miao11Hongyan Liu12Hongyan Liu13Hongyan Liu14Haiyang Zhang15Haiyang Zhang16The Shennong Laboratory, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaThe Shennong Laboratory, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaThe Shennong Laboratory, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaThe Shennong Laboratory, Zhengzhou, Henan, ChinaKey Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, ChinaThe Shennong Laboratory, Zhengzhou, Henan, ChinaInstitute of Plant Protection, Henan Academy of Agricultural Sciences, Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Zhengzhou, Henan, ChinaKey Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, ChinaThe Shennong Laboratory, Zhengzhou, Henan, ChinaKey Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, ChinaLeucine-rich repeat receptor-like kinases (LRR-RLKs) can participate in the regulation of plant growth and development, immunity and signal transduction. Sesamum indicum, one of the most important oil crops, has a significant role in promoting human health. In this study, 175 SiLRR-RLK genes were identified in S. indicum, and they were subdivided into 12 subfamilies by phylogenetic analysis. Gene duplication analysis showed that the expansion of the SiLRR-RLK family members in the sesame was mainly due to segmental duplication. Moreover, the gene expansion of subfamilies IV and III contributed to the perception of stimuli under M. phaseolina stress in the sesame. The collinearity analysis with other plant species revealed that the duplication of SiLRR-RLK genes occurred after the differentiation of dicotyledons and monocotyledons. The expression profile analysis and functional annotation of SiLRR-RLK genes indicated that they play a vital role in biotic stress. Furthermore, the protein−protein interaction and coexpression networks suggested that SiLRR-RLKs contributed to sesame resistance to Macrophomina phaseolina by acting alone or as a polymer with other SiLRR-RLKs. In conclusion, the comprehensive analysis of the SiLRR-RLK gene family provided a framework for further functional studies on SiLRR-RLK genes.https://www.frontiersin.org/articles/10.3389/fpls.2024.1334189/fullSesamum indicumLRR-RLKevolutionexpression profilesMacrophomina phaseolina |
| spellingShingle | Wenqing Yan Wenqing Yan Yunxia Ni Yunxia Ni Hui Zhao Hui Zhao Xintao Liu Min Jia Xinbei Zhao Yongdong Li Hongmei Miao Hongmei Miao Hongyan Liu Hongyan Liu Hongyan Liu Haiyang Zhang Haiyang Zhang Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress Frontiers in Plant Science Sesamum indicum LRR-RLK evolution expression profiles Macrophomina phaseolina |
| title | Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress |
| title_full | Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress |
| title_fullStr | Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress |
| title_full_unstemmed | Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress |
| title_short | Comprehensive analysis of sesame LRR-RLKs: structure, evolution and dynamic expression profiles under Macrophomina phaseolina stress |
| title_sort | comprehensive analysis of sesame lrr rlks structure evolution and dynamic expression profiles under macrophomina phaseolina stress |
| topic | Sesamum indicum LRR-RLK evolution expression profiles Macrophomina phaseolina |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2024.1334189/full |
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