The complete chloroplast genome sequence of Dalbergia oliveri
The first complete chloroplast genome (cpDNA) sequence of Dalbergia oliveri was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 156,750 bp in length, contains a large single copy region (LSC) of 156,750 bp and a small single copy region (SSC) of 19,510 bp, which w...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1714501 |
| _version_ | 1797639499419746304 |
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| author | Jinfeng Zhang Yunqing Li Sokh Heng Yi Wang |
| author_facet | Jinfeng Zhang Yunqing Li Sokh Heng Yi Wang |
| author_sort | Jinfeng Zhang |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Dalbergia oliveri was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 156,750 bp in length, contains a large single copy region (LSC) of 156,750 bp and a small single copy region (SSC) of 19,510 bp, which were separated by a pair of inverted repeats (IR) regions of 25,687 bp. The genome contains 127 genes, including 82 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 35.9%, and the corresponding values of the LSC, SSC, and IR regions are 33.4%, 28.8%, and 42.8%, respectively. Further phylogenomic analysis showed that D. oliveri and other species of Dalbergia genus clustered in a unique clade in Dalbergieae with Fabaceae family. |
| first_indexed | 2024-03-11T13:17:33Z |
| format | Article |
| id | doaj.art-707eb392ca104f58b07394ff7dcbb9f3 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:33Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-707eb392ca104f58b07394ff7dcbb9f32023-11-03T11:00:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015170770810.1080/23802359.2020.17145011714501The complete chloroplast genome sequence of Dalbergia oliveriJinfeng Zhang0Yunqing Li1Sokh Heng2Yi Wang3Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryInstitute of Forest and Wildlife Research and Development Forestry AdministrationLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Dalbergia oliveri was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 156,750 bp in length, contains a large single copy region (LSC) of 156,750 bp and a small single copy region (SSC) of 19,510 bp, which were separated by a pair of inverted repeats (IR) regions of 25,687 bp. The genome contains 127 genes, including 82 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 35.9%, and the corresponding values of the LSC, SSC, and IR regions are 33.4%, 28.8%, and 42.8%, respectively. Further phylogenomic analysis showed that D. oliveri and other species of Dalbergia genus clustered in a unique clade in Dalbergieae with Fabaceae family.http://dx.doi.org/10.1080/23802359.2020.1714501dalbergia oliverichloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Jinfeng Zhang Yunqing Li Sokh Heng Yi Wang The complete chloroplast genome sequence of Dalbergia oliveri Mitochondrial DNA. Part B. Resources dalbergia oliveri chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Dalbergia oliveri |
| title_full | The complete chloroplast genome sequence of Dalbergia oliveri |
| title_fullStr | The complete chloroplast genome sequence of Dalbergia oliveri |
| title_full_unstemmed | The complete chloroplast genome sequence of Dalbergia oliveri |
| title_short | The complete chloroplast genome sequence of Dalbergia oliveri |
| title_sort | complete chloroplast genome sequence of dalbergia oliveri |
| topic | dalbergia oliveri chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1714501 |
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