The Fragment-Based Development of a Benzofuran Hit as a New Class of <i>Escherichia coli</i> DsbA Inhibitors

A fragment-based drug discovery approach was taken to target the thiol-disulfide oxidoreductase enzyme DsbA from <i>Escherichia coli</i> (<i>Ec</i>DsbA). This enzyme is critical for the correct folding of virulence factors in many pathogenic Gram-negative bacteria, and small...

Full description

Bibliographic Details
Main Authors: Luke F. Duncan, Geqing Wang, Olga V. Ilyichova, Martin J. Scanlon, Begoña Heras, Belinda M. Abbott
Format: Article
Language:English
Published: MDPI AG 2019-10-01
Series:Molecules
Subjects:
Online Access:https://www.mdpi.com/1420-3049/24/20/3756
Description
Summary:A fragment-based drug discovery approach was taken to target the thiol-disulfide oxidoreductase enzyme DsbA from <i>Escherichia coli</i> (<i>Ec</i>DsbA). This enzyme is critical for the correct folding of virulence factors in many pathogenic Gram-negative bacteria, and small molecule inhibitors can potentially be developed as anti-virulence compounds. Biophysical screening of a library of fragments identified several classes of fragments with affinity to <i>Ec</i>DsbA. One hit with high mM affinity, 2-(6-bromobenzofuran-3-yl)acetic acid (<b>6</b>), was chemically elaborated at several positions around the scaffold. X-ray crystal structures of the elaborated analogues showed binding in the hydrophobic binding groove adjacent to the catalytic disulfide bond of <i>Ec</i>DsbA. Binding affinity was calculated based on NMR studies and compounds <b>25</b> and <b>28</b> were identified as the highest affinity binders with dissociation constants (<i>K</i><sub>D</sub>) of 326 &#177; 25 and 341 &#177; 57 &#181;M respectively. This work suggests the potential to develop benzofuran fragments into a novel class of <i>Ec</i>DsbA inhibitors.
ISSN:1420-3049