Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom
Abstract Planktotalea frisia SH6-1T Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we desc...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
BMC
2018-04-01
|
| Series: | Standards in Genomic Sciences |
| Subjects: | |
| Online Access: | http://link.springer.com/article/10.1186/s40793-018-0311-5 |
| _version_ | 1811332825509527552 |
|---|---|
| author | Insa Bakenhus Sonja Voget Anja Poehlein Thorsten Brinkhoff Rolf Daniel Meinhard Simon |
| author_facet | Insa Bakenhus Sonja Voget Anja Poehlein Thorsten Brinkhoff Rolf Daniel Meinhard Simon |
| author_sort | Insa Bakenhus |
| collection | DOAJ |
| description | Abstract Planktotalea frisia SH6-1T Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1T. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms. |
| first_indexed | 2024-04-13T16:42:53Z |
| format | Article |
| id | doaj.art-713f40ee413942308abea6e2a9f89036 |
| institution | Directory Open Access Journal |
| issn | 1944-3277 |
| language | English |
| last_indexed | 2024-04-13T16:42:53Z |
| publishDate | 2018-04-01 |
| publisher | BMC |
| record_format | Article |
| series | Standards in Genomic Sciences |
| spelling | doaj.art-713f40ee413942308abea6e2a9f890362022-12-22T02:39:11ZengBMCStandards in Genomic Sciences1944-32772018-04-011311910.1186/s40793-018-0311-5Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloomInsa Bakenhus0Sonja Voget1Anja Poehlein2Thorsten Brinkhoff3Rolf Daniel4Meinhard Simon5Institute for Chemistry and Biology of the Marine Environment (ICBM), University of OldenburgInstitute of Microbiology and Genetics, Genomic and Applied Microbiology and Göttingen Genomics Laboratory, University of GöttingenInstitute of Microbiology and Genetics, Genomic and Applied Microbiology and Göttingen Genomics Laboratory, University of GöttingenInstitute for Chemistry and Biology of the Marine Environment (ICBM), University of OldenburgInstitute of Microbiology and Genetics, Genomic and Applied Microbiology and Göttingen Genomics Laboratory, University of GöttingenInstitute for Chemistry and Biology of the Marine Environment (ICBM), University of OldenburgAbstract Planktotalea frisia SH6-1T Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1T. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms.http://link.springer.com/article/10.1186/s40793-018-0311-5Marine bacterioplanktonRhodobacteraceaeAlphaproteobacteriaRoseobacter groupType IV secretion systemDMSP |
| spellingShingle | Insa Bakenhus Sonja Voget Anja Poehlein Thorsten Brinkhoff Rolf Daniel Meinhard Simon Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom Standards in Genomic Sciences Marine bacterioplankton Rhodobacteraceae Alphaproteobacteria Roseobacter group Type IV secretion system DMSP |
| title | Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
| title_full | Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
| title_fullStr | Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
| title_full_unstemmed | Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
| title_short | Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
| title_sort | genome sequence of planktotalea frisia type strain sh6 1t a representative of the roseobacter group isolated from the north sea during a phytoplankton bloom |
| topic | Marine bacterioplankton Rhodobacteraceae Alphaproteobacteria Roseobacter group Type IV secretion system DMSP |
| url | http://link.springer.com/article/10.1186/s40793-018-0311-5 |
| work_keys_str_mv | AT insabakenhus genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom AT sonjavoget genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom AT anjapoehlein genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom AT thorstenbrinkhoff genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom AT rolfdaniel genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom AT meinhardsimon genomesequenceofplanktotaleafrisiatypestrainsh61tarepresentativeoftheroseobactergroupisolatedfromthenorthseaduringaphytoplanktonbloom |