PUG-View: programmatic access to chemical annotations integrated in PubChem
Abstract PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-inten...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
BMC
2019-08-01
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| Series: | Journal of Cheminformatics |
| Subjects: | |
| Online Access: | http://link.springer.com/article/10.1186/s13321-019-0375-2 |
| _version_ | 1818325760554827776 |
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| author | Sunghwan Kim Paul A. Thiessen Tiejun Cheng Jian Zhang Asta Gindulyte Evan E. Bolton |
| author_facet | Sunghwan Kim Paul A. Thiessen Tiejun Cheng Jian Zhang Asta Gindulyte Evan E. Bolton |
| author_sort | Sunghwan Kim |
| collection | DOAJ |
| description | Abstract PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies. |
| first_indexed | 2024-12-13T11:49:36Z |
| format | Article |
| id | doaj.art-714313a310d84ffdba872260e76eb61d |
| institution | Directory Open Access Journal |
| issn | 1758-2946 |
| language | English |
| last_indexed | 2024-12-13T11:49:36Z |
| publishDate | 2019-08-01 |
| publisher | BMC |
| record_format | Article |
| series | Journal of Cheminformatics |
| spelling | doaj.art-714313a310d84ffdba872260e76eb61d2022-12-21T23:47:25ZengBMCJournal of Cheminformatics1758-29462019-08-0111111110.1186/s13321-019-0375-2PUG-View: programmatic access to chemical annotations integrated in PubChemSunghwan Kim0Paul A. Thiessen1Tiejun Cheng2Jian Zhang3Asta Gindulyte4Evan E. Bolton5National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human ServicesAbstract PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies.http://link.springer.com/article/10.1186/s13321-019-0375-2PubChemPUG-ViewPUG-RESTProgrammatic accessWeb service |
| spellingShingle | Sunghwan Kim Paul A. Thiessen Tiejun Cheng Jian Zhang Asta Gindulyte Evan E. Bolton PUG-View: programmatic access to chemical annotations integrated in PubChem Journal of Cheminformatics PubChem PUG-View PUG-REST Programmatic access Web service |
| title | PUG-View: programmatic access to chemical annotations integrated in PubChem |
| title_full | PUG-View: programmatic access to chemical annotations integrated in PubChem |
| title_fullStr | PUG-View: programmatic access to chemical annotations integrated in PubChem |
| title_full_unstemmed | PUG-View: programmatic access to chemical annotations integrated in PubChem |
| title_short | PUG-View: programmatic access to chemical annotations integrated in PubChem |
| title_sort | pug view programmatic access to chemical annotations integrated in pubchem |
| topic | PubChem PUG-View PUG-REST Programmatic access Web service |
| url | http://link.springer.com/article/10.1186/s13321-019-0375-2 |
| work_keys_str_mv | AT sunghwankim pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem AT paulathiessen pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem AT tiejuncheng pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem AT jianzhang pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem AT astagindulyte pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem AT evanebolton pugviewprogrammaticaccesstochemicalannotationsintegratedinpubchem |