The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae)
Chinese Chestnut (Castanea mollissima) is an economically valuable tree in China. More than 300 wild and cultivated varieties were reported. In this study, we reported and characterized the complete chloroplast genome sequence of Chinese Chestnut cultivar ‘Hongli’, variant dominant strain with high...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-01-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1580160 |
| _version_ | 1827774052720181248 |
|---|---|
| author | Cancan Zhu Fenghou Shi Min Wang Yuqiang Zhao Yu Chen Guomin Geng |
| author_facet | Cancan Zhu Fenghou Shi Min Wang Yuqiang Zhao Yu Chen Guomin Geng |
| author_sort | Cancan Zhu |
| collection | DOAJ |
| description | Chinese Chestnut (Castanea mollissima) is an economically valuable tree in China. More than 300 wild and cultivated varieties were reported. In this study, we reported and characterized the complete chloroplast genome sequence of Chinese Chestnut cultivar ‘Hongli’, variant dominant strain with high yield, good quality of nuts, especially with red coloration in their leaves, twigs, and involucres of fruits. The chloroplast genome was determined to be 160,871 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 90,498 and 18,971 bp, respectively, which were separated by a pair of 25,701 bp inverted repeat (IR) regions. The genome is predicted to contain 130 genes, including 83 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 2 pseudo genes. The overall GC content of the genome is 36.7%. A phylogenetic tree reconstructed by 25 chloroplast genomes reveals that C. mollissima 'Hongli' is most closely related to wild C. mollissima that was collected from China. |
| first_indexed | 2024-03-11T13:32:27Z |
| format | Article |
| id | doaj.art-72c3eb9607b44c509ba2da6087c45d7b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:27Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-72c3eb9607b44c509ba2da6087c45d7b2023-11-02T16:07:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014199399410.1080/23802359.2019.15801601580160The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae)Cancan Zhu0Fenghou Shi1Min Wang2Yuqiang Zhao3Yu Chen4Guomin Geng5Jiangsu Province and Chinese Academy of SciencesNanjing Forestry UniversityJiangsu Province and Chinese Academy of SciencesJiangsu Province and Chinese Academy of SciencesJiangsu Province and Chinese Academy of SciencesJiangsu Province and Chinese Academy of SciencesChinese Chestnut (Castanea mollissima) is an economically valuable tree in China. More than 300 wild and cultivated varieties were reported. In this study, we reported and characterized the complete chloroplast genome sequence of Chinese Chestnut cultivar ‘Hongli’, variant dominant strain with high yield, good quality of nuts, especially with red coloration in their leaves, twigs, and involucres of fruits. The chloroplast genome was determined to be 160,871 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 90,498 and 18,971 bp, respectively, which were separated by a pair of 25,701 bp inverted repeat (IR) regions. The genome is predicted to contain 130 genes, including 83 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 2 pseudo genes. The overall GC content of the genome is 36.7%. A phylogenetic tree reconstructed by 25 chloroplast genomes reveals that C. mollissima 'Hongli' is most closely related to wild C. mollissima that was collected from China.http://dx.doi.org/10.1080/23802359.2019.1580160castanea mollissimacomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Cancan Zhu Fenghou Shi Min Wang Yuqiang Zhao Yu Chen Guomin Geng The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) Mitochondrial DNA. Part B. Resources castanea mollissima complete chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) |
| title_full | The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) |
| title_fullStr | The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) |
| title_full_unstemmed | The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) |
| title_short | The complete chloroplast genome of a variety of Castanea mollissima 'Hongli' (Fagaceae) |
| title_sort | complete chloroplast genome of a variety of castanea mollissima hongli fagaceae |
| topic | castanea mollissima complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1580160 |
| work_keys_str_mv | AT cancanzhu thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT fenghoushi thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT minwang thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT yuqiangzhao thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT yuchen thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT guomingeng thecompletechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT cancanzhu completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT fenghoushi completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT minwang completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT yuqiangzhao completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT yuchen completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae AT guomingeng completechloroplastgenomeofavarietyofcastaneamollissimahonglifagaceae |