BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

Summary: Despite rapid advances in whole genome sequencing (WGS) technologies, their integration into routine microbiological diagnostics has been hampered by the lack of standardized downstream bioinformatics analysis. We developed a comprehensive and computationally low-resource bioinformatics pip...

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Bibliographic Details
Main Authors: Basil B. Xavier, Mohamed Mysara, Mattia Bolzan, Bruno Ribeiro-Gonçalves, Blaise T.F. Alako, Peter Harrison, Christine Lammens, Samir Kumar-Singh, Herman Goossens, João A. Carriço, Guy Cochrane, Surbhi Malhotra-Kumar
Format: Article
Language:English
Published: Elsevier 2020-01-01
Series:iScience
Online Access:http://www.sciencedirect.com/science/article/pii/S2589004219305140

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