The sampling strategy of oral microbiome

Abstract There are multiple habitats in the oral cavity with bacteria, fungi, viruses, and protozoa residing in, which together constitute the oral micro‐ecosystem. These microflorae in the oral cavity primarily include saliva, supragingival dental plaque, subgingival dental plaque, submucosal plaqu...

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Main Authors: Hongye Lu, Peihui Zou, Yifei Zhang, Qian Zhang, Zhibin Chen, Feng Chen
Format: Article
Language:English
Published: Wiley 2022-06-01
Series:iMeta
Subjects:
Online Access:https://doi.org/10.1002/imt2.23
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author Hongye Lu
Peihui Zou
Yifei Zhang
Qian Zhang
Zhibin Chen
Feng Chen
author_facet Hongye Lu
Peihui Zou
Yifei Zhang
Qian Zhang
Zhibin Chen
Feng Chen
author_sort Hongye Lu
collection DOAJ
description Abstract There are multiple habitats in the oral cavity with bacteria, fungi, viruses, and protozoa residing in, which together constitute the oral micro‐ecosystem. These microflorae in the oral cavity primarily include saliva, supragingival dental plaque, subgingival dental plaque, submucosal plaque around implants, plaque in root canals, and plaque on the mucosal surface. The interest and knowledge of the microbiome have dynamically increased with the advancement of technology. Therefore, a reliable, feasible, and practical sampling strategy for the oral microbiome is required for the investigation. This paper introduced the sampling strategy of oral microorganisms, consisting of sample collection, transport, processing, and storage. The materials and devices involved in this study are all commonly used in clinical practice or laboratory. The feasibility and reliability of the sampling methods described in this paper have been verified by multiple studies.
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spelling doaj.art-74c63b4b41fb47eeb802f04c997c52242022-12-22T03:32:52ZengWileyiMeta2770-596X2022-06-0112n/an/a10.1002/imt2.23The sampling strategy of oral microbiomeHongye Lu0Peihui Zou1Yifei Zhang2Qian Zhang3Zhibin Chen4Feng Chen5Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province Cancer Center of Zhejiang University Hangzhou ChinaDepartment of Periodontology, National Engineering Laboratory for Digital and Material Technology of Stomatology, Beijing Key Laboratory of Digital Stomatology Peking University School and Hospital of Stomatology Beijing ChinaCentral Laboratory, Peking University School and Hospital of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology Beijing ChinaCentral Laboratory, Peking University School and Hospital of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology Beijing ChinaDepartment of Periodontology, National Engineering Laboratory for Digital and Material Technology of Stomatology, Beijing Key Laboratory of Digital Stomatology Peking University School and Hospital of Stomatology Beijing ChinaCentral Laboratory, Peking University School and Hospital of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology Beijing ChinaAbstract There are multiple habitats in the oral cavity with bacteria, fungi, viruses, and protozoa residing in, which together constitute the oral micro‐ecosystem. These microflorae in the oral cavity primarily include saliva, supragingival dental plaque, subgingival dental plaque, submucosal plaque around implants, plaque in root canals, and plaque on the mucosal surface. The interest and knowledge of the microbiome have dynamically increased with the advancement of technology. Therefore, a reliable, feasible, and practical sampling strategy for the oral microbiome is required for the investigation. This paper introduced the sampling strategy of oral microorganisms, consisting of sample collection, transport, processing, and storage. The materials and devices involved in this study are all commonly used in clinical practice or laboratory. The feasibility and reliability of the sampling methods described in this paper have been verified by multiple studies.https://doi.org/10.1002/imt2.23oral cavitymicrobiomesalivaplaquesampling strategy
spellingShingle Hongye Lu
Peihui Zou
Yifei Zhang
Qian Zhang
Zhibin Chen
Feng Chen
The sampling strategy of oral microbiome
iMeta
oral cavity
microbiome
saliva
plaque
sampling strategy
title The sampling strategy of oral microbiome
title_full The sampling strategy of oral microbiome
title_fullStr The sampling strategy of oral microbiome
title_full_unstemmed The sampling strategy of oral microbiome
title_short The sampling strategy of oral microbiome
title_sort sampling strategy of oral microbiome
topic oral cavity
microbiome
saliva
plaque
sampling strategy
url https://doi.org/10.1002/imt2.23
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