Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)

Alisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a...

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Main Authors: Jie Min, Gang Li, Yan Gong
Format: Article
Language:English
Published: Taylor & Francis Group 2020-04-01
Series:Mitochondrial DNA. Part B. Resources
Subjects:
Online Access:http://dx.doi.org/10.1080/23802359.2020.1756965
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author Jie Min
Gang Li
Yan Gong
author_facet Jie Min
Gang Li
Yan Gong
author_sort Jie Min
collection DOAJ
description Alisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a small single-copy region (SSC) of 12,209 bp, and a pair of inverted repeat (IR) regions of 32,714 bp. The overall nucleotide composition of chloroplast genome sequence is: A (53,496 bp, 31.9%), T (54,364 bp, 32.4%), C (30,346 bp, 18.1%), G (29,436 bp, 17.6%) and the total G + C content of 35.7%. The complete chloroplast genome sequence contains 136 genes, including 91 encoding genes, 37 transfer RNA genes and 8 ribosomal RNA genes. For the phylogenetic analysis result, A. plantago-aquatica is closely related to A. gramineum of the family Alismataceae in the phylogenetic relationship in this study.
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spelling doaj.art-75795022ea34461a8a1c7f737994fcc92023-11-03T13:50:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521989199010.1080/23802359.2020.17569651756965Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)Jie Min0Gang Li1Yan Gong2The Third Hospital of NanchangThe Third Hospital of NanchangThe Third Hospital of NanchangAlisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a small single-copy region (SSC) of 12,209 bp, and a pair of inverted repeat (IR) regions of 32,714 bp. The overall nucleotide composition of chloroplast genome sequence is: A (53,496 bp, 31.9%), T (54,364 bp, 32.4%), C (30,346 bp, 18.1%), G (29,436 bp, 17.6%) and the total G + C content of 35.7%. The complete chloroplast genome sequence contains 136 genes, including 91 encoding genes, 37 transfer RNA genes and 8 ribosomal RNA genes. For the phylogenetic analysis result, A. plantago-aquatica is closely related to A. gramineum of the family Alismataceae in the phylogenetic relationship in this study.http://dx.doi.org/10.1080/23802359.2020.1756965alisma plantago-aquaticaalismataceaealismachloroplastgenome
spellingShingle Jie Min
Gang Li
Yan Gong
Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
Mitochondrial DNA. Part B. Resources
alisma plantago-aquatica
alismataceae
alisma
chloroplast
genome
title Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
title_full Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
title_fullStr Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
title_full_unstemmed Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
title_short Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
title_sort characterization and phylogenetic relationships analysis of the complete chloroplast genome of alisma plantago aquatica alismataceae alisma
topic alisma plantago-aquatica
alismataceae
alisma
chloroplast
genome
url http://dx.doi.org/10.1080/23802359.2020.1756965
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AT yangong characterizationandphylogeneticrelationshipsanalysisofthecompletechloroplastgenomeofalismaplantagoaquaticaalismataceaealisma