Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)
Alisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a...
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Format: | Article |
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Taylor & Francis Group
2020-04-01
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Series: | Mitochondrial DNA. Part B. Resources |
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Online Access: | http://dx.doi.org/10.1080/23802359.2020.1756965 |
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author | Jie Min Gang Li Yan Gong |
author_facet | Jie Min Gang Li Yan Gong |
author_sort | Jie Min |
collection | DOAJ |
description | Alisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a small single-copy region (SSC) of 12,209 bp, and a pair of inverted repeat (IR) regions of 32,714 bp. The overall nucleotide composition of chloroplast genome sequence is: A (53,496 bp, 31.9%), T (54,364 bp, 32.4%), C (30,346 bp, 18.1%), G (29,436 bp, 17.6%) and the total G + C content of 35.7%. The complete chloroplast genome sequence contains 136 genes, including 91 encoding genes, 37 transfer RNA genes and 8 ribosomal RNA genes. For the phylogenetic analysis result, A. plantago-aquatica is closely related to A. gramineum of the family Alismataceae in the phylogenetic relationship in this study. |
first_indexed | 2024-03-11T13:14:44Z |
format | Article |
id | doaj.art-75795022ea34461a8a1c7f737994fcc9 |
institution | Directory Open Access Journal |
issn | 2380-2359 |
language | English |
last_indexed | 2024-03-11T13:14:44Z |
publishDate | 2020-04-01 |
publisher | Taylor & Francis Group |
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series | Mitochondrial DNA. Part B. Resources |
spelling | doaj.art-75795022ea34461a8a1c7f737994fcc92023-11-03T13:50:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521989199010.1080/23802359.2020.17569651756965Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma)Jie Min0Gang Li1Yan Gong2The Third Hospital of NanchangThe Third Hospital of NanchangThe Third Hospital of NanchangAlisma plantago-aquatica is an important medicinal plant in traditional Chinese medicine. In this paper, we have reported and characterized the complete chloroplast genome of A. plantago-aquatica. Its sequence was 167,642 bp in length, which contained a large single-copy region (LSC) of 90,005 bp, a small single-copy region (SSC) of 12,209 bp, and a pair of inverted repeat (IR) regions of 32,714 bp. The overall nucleotide composition of chloroplast genome sequence is: A (53,496 bp, 31.9%), T (54,364 bp, 32.4%), C (30,346 bp, 18.1%), G (29,436 bp, 17.6%) and the total G + C content of 35.7%. The complete chloroplast genome sequence contains 136 genes, including 91 encoding genes, 37 transfer RNA genes and 8 ribosomal RNA genes. For the phylogenetic analysis result, A. plantago-aquatica is closely related to A. gramineum of the family Alismataceae in the phylogenetic relationship in this study.http://dx.doi.org/10.1080/23802359.2020.1756965alisma plantago-aquaticaalismataceaealismachloroplastgenome |
spellingShingle | Jie Min Gang Li Yan Gong Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) Mitochondrial DNA. Part B. Resources alisma plantago-aquatica alismataceae alisma chloroplast genome |
title | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) |
title_full | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) |
title_fullStr | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) |
title_full_unstemmed | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) |
title_short | Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Alisma plantago-aquatica (Alismataceae: Alisma) |
title_sort | characterization and phylogenetic relationships analysis of the complete chloroplast genome of alisma plantago aquatica alismataceae alisma |
topic | alisma plantago-aquatica alismataceae alisma chloroplast genome |
url | http://dx.doi.org/10.1080/23802359.2020.1756965 |
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