Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China
Wuyi tea (Camellia. sinensis, Synonym: Thea Bohea L.) is recognized as the most prestigious oolong tea in China. For germplasm identification and protection, the complete chloroplast genomes of five classical Wuyi tea varieties were determined by next-generation sequencing. These chloroplast genomes...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2062263 |
| _version_ | 1797638643108544512 |
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| author | Li Fan Li Li Yunfei Hu Yibiao Huang Yongcong Hong Bo Zhang |
| author_facet | Li Fan Li Li Yunfei Hu Yibiao Huang Yongcong Hong Bo Zhang |
| author_sort | Li Fan |
| collection | DOAJ |
| description | Wuyi tea (Camellia. sinensis, Synonym: Thea Bohea L.) is recognized as the most prestigious oolong tea in China. For germplasm identification and protection, the complete chloroplast genomes of five classical Wuyi tea varieties were determined by next-generation sequencing. These chloroplast genomes showed highly conserved structures and are 157,024–157,126 bp in length, consisting of a pair of reverse repeats (IR) regions of 25,944–26,095 bp, one large single-copy (LSC) region of 86,594–86,859 bp, and one small single copy (SSC) region of 18,276–18,291 bp. A total of 137 genes were observed and overall GC contents were all about 37.3%. Phylogenetic analysis revealed Wuyi tea varieties did not cluster together, suggesting that these Wuyi tea varieties might have diverged early in their evolutionary history and the complete chloroplast genome could be used as a super-barcode to identify these varieties. This study will be valuable for future studies of evolution and intraspecific identification in Wuyi tea. |
| first_indexed | 2024-03-11T13:05:34Z |
| format | Article |
| id | doaj.art-76890862a5ca4e1c8d877e0874b6a7b7 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:34Z |
| publishDate | 2022-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-76890862a5ca4e1c8d877e0874b6a7b72023-11-03T14:36:03ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-04-017465565710.1080/23802359.2022.20622632062263Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in ChinaLi Fan0Li Li1Yunfei Hu2Yibiao Huang3Yongcong Hong4Bo Zhang5College of Tea and Food Science, Wuyi UniversityCollege of Tea and Food Science, Wuyi UniversityCollege of Tea and Food Science, Wuyi UniversityCollege of Tea and Food Science, Wuyi UniversityCollege of Tea and Food Science, Wuyi UniversityCollege of Tea and Food Science, Wuyi UniversityWuyi tea (Camellia. sinensis, Synonym: Thea Bohea L.) is recognized as the most prestigious oolong tea in China. For germplasm identification and protection, the complete chloroplast genomes of five classical Wuyi tea varieties were determined by next-generation sequencing. These chloroplast genomes showed highly conserved structures and are 157,024–157,126 bp in length, consisting of a pair of reverse repeats (IR) regions of 25,944–26,095 bp, one large single-copy (LSC) region of 86,594–86,859 bp, and one small single copy (SSC) region of 18,276–18,291 bp. A total of 137 genes were observed and overall GC contents were all about 37.3%. Phylogenetic analysis revealed Wuyi tea varieties did not cluster together, suggesting that these Wuyi tea varieties might have diverged early in their evolutionary history and the complete chloroplast genome could be used as a super-barcode to identify these varieties. This study will be valuable for future studies of evolution and intraspecific identification in Wuyi tea.http://dx.doi.org/10.1080/23802359.2022.2062263wuyi teachloroplast genomephylogenetic analysissuper-barcode |
| spellingShingle | Li Fan Li Li Yunfei Hu Yibiao Huang Yongcong Hong Bo Zhang Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China Mitochondrial DNA. Part B. Resources wuyi tea chloroplast genome phylogenetic analysis super-barcode |
| title | Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China |
| title_full | Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China |
| title_fullStr | Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China |
| title_full_unstemmed | Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China |
| title_short | Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China |
| title_sort | complete chloroplast genomes of five classical wuyi tea varieties camellia sinensis synonym thea bohea l the most famous oolong tea in china |
| topic | wuyi tea chloroplast genome phylogenetic analysis super-barcode |
| url | http://dx.doi.org/10.1080/23802359.2022.2062263 |
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