Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei
Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu 2008, also called Cardamine enshiensis, belongs to the genus Cardamine, Brassicaceae. As a plant with selenium enrichment ability, it has high development value. Here, we analyzed the chloroplast genome of C. hupingshanensis. The com...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-08-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2113752 |
| _version_ | 1797638578364219392 |
|---|---|
| author | Xiuqing Liu Siying Zhang |
| author_facet | Xiuqing Liu Siying Zhang |
| author_sort | Xiuqing Liu |
| collection | DOAJ |
| description | Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu 2008, also called Cardamine enshiensis, belongs to the genus Cardamine, Brassicaceae. As a plant with selenium enrichment ability, it has high development value. Here, we analyzed the chloroplast genome of C. hupingshanensis. The complete chloroplast genome had a total size of 154,832 bp with a typical quadripartite structure, including a large single-copy region (LSC, 83,908 bp) and a small single-copy region (SSC, 17,938 bp), separated by a pair of inverted repeat regions (IRs, 26,493 bp). Genome annotation showed the chloroplast genome contained 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 143 SSRs were found in the chloroplast genome. Phylogenetic analysis showed that C. hupingshanensis was closer to the C. circaeoides and C. lyrata. This chloroplast genome resource will be useful for study of the phylogeny and evolution of Cardamine in the future. |
| first_indexed | 2024-03-11T13:04:37Z |
| format | Article |
| id | doaj.art-76ed1747c13249fdbe49b404ec0bfc8d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:37Z |
| publishDate | 2022-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-76ed1747c13249fdbe49b404ec0bfc8d2023-11-03T14:44:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-08-01781574157610.1080/23802359.2022.21137522113752Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, HubeiXiuqing Liu0Siying Zhang1Forestry College, Xinyang Agriculture and Forestry UniversityTourism Management College, Xinyang Agriculture and Forestry UniversityCardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu 2008, also called Cardamine enshiensis, belongs to the genus Cardamine, Brassicaceae. As a plant with selenium enrichment ability, it has high development value. Here, we analyzed the chloroplast genome of C. hupingshanensis. The complete chloroplast genome had a total size of 154,832 bp with a typical quadripartite structure, including a large single-copy region (LSC, 83,908 bp) and a small single-copy region (SSC, 17,938 bp), separated by a pair of inverted repeat regions (IRs, 26,493 bp). Genome annotation showed the chloroplast genome contained 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 143 SSRs were found in the chloroplast genome. Phylogenetic analysis showed that C. hupingshanensis was closer to the C. circaeoides and C. lyrata. This chloroplast genome resource will be useful for study of the phylogeny and evolution of Cardamine in the future.http://dx.doi.org/10.1080/23802359.2022.2113752brassicaceaecardamine hupingshanensischloroplast genomephylogeny |
| spellingShingle | Xiuqing Liu Siying Zhang Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei Mitochondrial DNA. Part B. Resources brassicaceae cardamine hupingshanensis chloroplast genome phylogeny |
| title | Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei |
| title_full | Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei |
| title_fullStr | Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei |
| title_full_unstemmed | Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei |
| title_short | Complete chloroplast genome of Cardamine hupingshanensis K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei |
| title_sort | complete chloroplast genome of cardamine hupingshanensis k m liu l b chen h f bai l h liu brassicaceae in enshi hubei |
| topic | brassicaceae cardamine hupingshanensis chloroplast genome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2022.2113752 |
| work_keys_str_mv | AT xiuqingliu completechloroplastgenomeofcardaminehupingshanensiskmliulbchenhfbailhliubrassicaceaeinenshihubei AT siyingzhang completechloroplastgenomeofcardaminehupingshanensiskmliulbchenhfbailhliubrassicaceaeinenshihubei |