The complete chloroplast genome sequence of Viola japonica (Violaceae)
We determined the complete chloroplast genome sequence of Viola japonica using Illumina pair-end sequencing data. The whole chloroplast genome was 156,504 bp in length, consisting of a pair of inverted repeats (IR) of 26,427 bp, a large single-copy (LSC) region of 85,647 bp, and a small single-copy...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1731376 |
| _version_ | 1827772927073845248 |
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| author | Kyeong-Sik Cheon Dong-Kap Kim Kyung-Ah Kim Ki-Oug Yoo |
| author_facet | Kyeong-Sik Cheon Dong-Kap Kim Kyung-Ah Kim Ki-Oug Yoo |
| author_sort | Kyeong-Sik Cheon |
| collection | DOAJ |
| description | We determined the complete chloroplast genome sequence of Viola japonica using Illumina pair-end sequencing data. The whole chloroplast genome was 156,504 bp in length, consisting of a pair of inverted repeats (IR) of 26,427 bp, a large single-copy (LSC) region of 85,647 bp, and a small single-copy (SSC) region of 18,003 bp. The gene contents and order were exactly the same as published five Violaceae plastomes. A total of 111 unique genes were annotated, including 77 protein-coding genes, 30 tRNAs, and 4 rRNAs. Among the annotated genes, 16 genes contained one or two introns. The ML tree showed that V. japonica formed a clade with Viola seoulensis. |
| first_indexed | 2024-03-11T13:15:40Z |
| format | Article |
| id | doaj.art-797f295f8574407c89c938221364e09e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:15:40Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-797f295f8574407c89c938221364e09e2023-11-03T13:50:17ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521297129810.1080/23802359.2020.17313761731376The complete chloroplast genome sequence of Viola japonica (Violaceae)Kyeong-Sik Cheon0Dong-Kap Kim1Kyung-Ah Kim2Ki-Oug Yoo3Sangji UniversityKorea National ArboretumKangwon National UniversityKangwon National UniversityWe determined the complete chloroplast genome sequence of Viola japonica using Illumina pair-end sequencing data. The whole chloroplast genome was 156,504 bp in length, consisting of a pair of inverted repeats (IR) of 26,427 bp, a large single-copy (LSC) region of 85,647 bp, and a small single-copy (SSC) region of 18,003 bp. The gene contents and order were exactly the same as published five Violaceae plastomes. A total of 111 unique genes were annotated, including 77 protein-coding genes, 30 tRNAs, and 4 rRNAs. Among the annotated genes, 16 genes contained one or two introns. The ML tree showed that V. japonica formed a clade with Viola seoulensis.http://dx.doi.org/10.1080/23802359.2020.1731376violaceaeviolachloroplast genomephylogeny |
| spellingShingle | Kyeong-Sik Cheon Dong-Kap Kim Kyung-Ah Kim Ki-Oug Yoo The complete chloroplast genome sequence of Viola japonica (Violaceae) Mitochondrial DNA. Part B. Resources violaceae viola chloroplast genome phylogeny |
| title | The complete chloroplast genome sequence of Viola japonica (Violaceae) |
| title_full | The complete chloroplast genome sequence of Viola japonica (Violaceae) |
| title_fullStr | The complete chloroplast genome sequence of Viola japonica (Violaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Viola japonica (Violaceae) |
| title_short | The complete chloroplast genome sequence of Viola japonica (Violaceae) |
| title_sort | complete chloroplast genome sequence of viola japonica violaceae |
| topic | violaceae viola chloroplast genome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2020.1731376 |
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