Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia
Curcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most c...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2018-08-01
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| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340918308114 |
| _version_ | 1819131015653752832 |
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| author | Sima Taheri Thohirah Lee Abdullah Yusuf Muhammad Noor Hirzahida Mohd Padil Mahbod Sahebi Parisa Azizi |
| author_facet | Sima Taheri Thohirah Lee Abdullah Yusuf Muhammad Noor Hirzahida Mohd Padil Mahbod Sahebi Parisa Azizi |
| author_sort | Sima Taheri |
| collection | DOAJ |
| description | Curcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most commercially important cultivars are hybrids that are propagated vegetatively. In spite of other flowering plants, there is still lack of transcriptomic-based data on the functions of genes related to flower color in C. alismatifolia. The raw data presented in this article provides information on new original transcriptome data of two cultivars of C. alismatifolia by Illumina Hiseq. 4000 RNA-Seq technology which is the first ever report about this plant. The data is accessible via European Nucleotide Archive (ENA) under project number PRJEB18956. Keywords: Curcuma alismatifolia, De novo, Illumina, RNA-Seq, Transcriptome assembly |
| first_indexed | 2024-12-22T09:08:47Z |
| format | Article |
| id | doaj.art-7a06ee08ad68461a88cd8e57fedc5d9f |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-22T09:08:47Z |
| publishDate | 2018-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-7a06ee08ad68461a88cd8e57fedc5d9f2022-12-21T18:31:30ZengElsevierData in Brief2352-34092018-08-011924522454Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifoliaSima Taheri0Thohirah Lee Abdullah1Yusuf Muhammad Noor2Hirzahida Mohd Padil3Mahbod Sahebi4Parisa Azizi5Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Corresponding author.Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaLaboratory of Bioinformatics and Computational Biology, Malaysia Genome Institute, Jalan Bangi, 43000 Kajang, Selangor, MalaysiaLaboratory of Bioinformatics and Computational Biology, Malaysia Genome Institute, Jalan Bangi, 43000 Kajang, Selangor, MalaysiaLaboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaLaboratory of Plantation Science and Technology, Institute of Plantation Studies, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaCurcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most commercially important cultivars are hybrids that are propagated vegetatively. In spite of other flowering plants, there is still lack of transcriptomic-based data on the functions of genes related to flower color in C. alismatifolia. The raw data presented in this article provides information on new original transcriptome data of two cultivars of C. alismatifolia by Illumina Hiseq. 4000 RNA-Seq technology which is the first ever report about this plant. The data is accessible via European Nucleotide Archive (ENA) under project number PRJEB18956. Keywords: Curcuma alismatifolia, De novo, Illumina, RNA-Seq, Transcriptome assemblyhttp://www.sciencedirect.com/science/article/pii/S2352340918308114 |
| spellingShingle | Sima Taheri Thohirah Lee Abdullah Yusuf Muhammad Noor Hirzahida Mohd Padil Mahbod Sahebi Parisa Azizi Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia Data in Brief |
| title | Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia |
| title_full | Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia |
| title_fullStr | Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia |
| title_full_unstemmed | Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia |
| title_short | Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia |
| title_sort | data of the first de novo transcriptome assembly of the inflorescence of curcuma alismatifolia |
| url | http://www.sciencedirect.com/science/article/pii/S2352340918308114 |
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