The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future co...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1815601 |
| _version_ | 1797639079335034880 |
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| author | Jingfang Chen Yongmei Chen Renchao Zhou Ying Liu |
| author_facet | Jingfang Chen Yongmei Chen Renchao Zhou Ying Liu |
| author_sort | Jingfang Chen |
| collection | DOAJ |
| description | Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris. |
| first_indexed | 2024-03-11T13:12:38Z |
| format | Article |
| id | doaj.art-7b3d3a940af6400aa0b65587060cdcaa |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:38Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-7b3d3a940af6400aa0b65587060cdcaa2023-11-03T14:00:33ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533286328710.1080/23802359.2020.18156011815601The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to ChinaJingfang Chen0Yongmei Chen1Renchao Zhou2Ying Liu3State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversitySchool of Chemical Engineering, Sichuan University of Science and EngineeringState Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversityState Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversityAdiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris.http://dx.doi.org/10.1080/23802359.2020.1815601adiantum reniforme var. sinensechloroplast genomephylogenetic analysis |
| spellingShingle | Jingfang Chen Yongmei Chen Renchao Zhou Ying Liu The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China Mitochondrial DNA. Part B. Resources adiantum reniforme var. sinense chloroplast genome phylogenetic analysis |
| title | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
| title_full | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
| title_fullStr | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
| title_full_unstemmed | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
| title_short | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
| title_sort | chloroplast genome of adiantum reniforme var sinense an endangered fern endemic to china |
| topic | adiantum reniforme var. sinense chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1815601 |
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