Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance

Abstract Background It has been proposed that divergence in the gut microbiota composition between incipient species could contribute to their reproductive isolation. Nevertheless, empirical evidence for the role of gut microbiota in speciation is scarce. Moreover, it is still largely unknown to wha...

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Main Authors: Camille Sottas, Lucie Schmiedová, Jakub Kreisinger, Tomáš Albrecht, Jiří Reif, Tomasz S. Osiejuk, Radka Reifová
Format: Article
Language:English
Published: BMC 2021-03-01
Series:BMC Ecology and Evolution
Subjects:
Online Access:https://doi.org/10.1186/s12862-021-01773-1
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author Camille Sottas
Lucie Schmiedová
Jakub Kreisinger
Tomáš Albrecht
Jiří Reif
Tomasz S. Osiejuk
Radka Reifová
author_facet Camille Sottas
Lucie Schmiedová
Jakub Kreisinger
Tomáš Albrecht
Jiří Reif
Tomasz S. Osiejuk
Radka Reifová
author_sort Camille Sottas
collection DOAJ
description Abstract Background It has been proposed that divergence in the gut microbiota composition between incipient species could contribute to their reproductive isolation. Nevertheless, empirical evidence for the role of gut microbiota in speciation is scarce. Moreover, it is still largely unknown to what extent closely related species in the early stages of speciation differ in their gut microbiota composition, especially in non-mammalian taxa, and which factors drive the divergence. Here we analysed the gut microbiota in two closely related passerine species, the common nightingale (Luscinia megarhynchos) and the thrush nightingale (Luscinia luscinia). The ranges of these two species overlap in a secondary contact zone, where both species occasionally hybridize and where interspecific competition has resulted in habitat use differentiation. Results We analysed the gut microbiota from the proximal, middle and distal part of the small intestine in both sympatric and allopatric populations of the two nightingale species using sequencing of bacterial 16S rRNA. We found small but significant differences in the microbiota composition among the three gut sections. However, the gut microbiota composition in the two nightingale species did not differ significantly between either sympatric or allopatric populations. Most of the observed variation in the gut microbiota composition was explained by inter-individual differences. Conclusions To our knowledge, this is the first attempt to assess the potential role of the gut microbiota in bird speciation. Our results suggest that neither habitat use, nor geographical distance, nor species identity have strong influence on the nightingale gut microbiota composition. This suggests that changes in the gut microbiota composition are unlikely to contribute to reproductive isolation in these passerine birds.
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spelling doaj.art-7b47daec617749c5b9884fa2fb2f75a62022-12-21T18:29:04ZengBMCBMC Ecology and Evolution2730-71822021-03-0121111410.1186/s12862-021-01773-1Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distanceCamille Sottas0Lucie Schmiedová1Jakub Kreisinger2Tomáš Albrecht3Jiří Reif4Tomasz S. Osiejuk5Radka Reifová6Department of Zoology, Faculty of Science, Charles UniversityDepartment of Zoology, Faculty of Science, Charles UniversityDepartment of Zoology, Faculty of Science, Charles UniversityDepartment of Zoology, Faculty of Science, Charles UniversityFaculty of Science, Institute for Environmental Studies, Charles UniversityDepartment of Behavioural Ecology, Institute of Environmental Biology, Faculty of Biology, Adam Mickiewicz UniversityDepartment of Zoology, Faculty of Science, Charles UniversityAbstract Background It has been proposed that divergence in the gut microbiota composition between incipient species could contribute to their reproductive isolation. Nevertheless, empirical evidence for the role of gut microbiota in speciation is scarce. Moreover, it is still largely unknown to what extent closely related species in the early stages of speciation differ in their gut microbiota composition, especially in non-mammalian taxa, and which factors drive the divergence. Here we analysed the gut microbiota in two closely related passerine species, the common nightingale (Luscinia megarhynchos) and the thrush nightingale (Luscinia luscinia). The ranges of these two species overlap in a secondary contact zone, where both species occasionally hybridize and where interspecific competition has resulted in habitat use differentiation. Results We analysed the gut microbiota from the proximal, middle and distal part of the small intestine in both sympatric and allopatric populations of the two nightingale species using sequencing of bacterial 16S rRNA. We found small but significant differences in the microbiota composition among the three gut sections. However, the gut microbiota composition in the two nightingale species did not differ significantly between either sympatric or allopatric populations. Most of the observed variation in the gut microbiota composition was explained by inter-individual differences. Conclusions To our knowledge, this is the first attempt to assess the potential role of the gut microbiota in bird speciation. Our results suggest that neither habitat use, nor geographical distance, nor species identity have strong influence on the nightingale gut microbiota composition. This suggests that changes in the gut microbiota composition are unlikely to contribute to reproductive isolation in these passerine birds.https://doi.org/10.1186/s12862-021-01773-1Gut microbiomeReproductive isolationDietHabitat usePasserinesLuscinia
spellingShingle Camille Sottas
Lucie Schmiedová
Jakub Kreisinger
Tomáš Albrecht
Jiří Reif
Tomasz S. Osiejuk
Radka Reifová
Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
BMC Ecology and Evolution
Gut microbiome
Reproductive isolation
Diet
Habitat use
Passerines
Luscinia
title Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
title_full Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
title_fullStr Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
title_full_unstemmed Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
title_short Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
title_sort gut microbiota in two recently diverged passerine species evaluating the effects of species identity habitat use and geographic distance
topic Gut microbiome
Reproductive isolation
Diet
Habitat use
Passerines
Luscinia
url https://doi.org/10.1186/s12862-021-01773-1
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