Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation

The high-risk human papillomaviruses are oncogenic viruses associated with almost all cases of cervical carcinomas, and increasing numbers of anal, and oral cancers. Two oncogenic HPV proteins, E6 and E7, are capable of immortalizing keratinocytes and are required for HPV associated cell transformat...

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Main Authors: Kerry Dust, Michael Carpenter, Julie Chih-yu Chen, Chris Grant, Stuart McCorrister, Garret R. Westmacott, Alberto Severini
Format: Article
Language:English
Published: MDPI AG 2022-08-01
Series:Viruses
Subjects:
Online Access:https://www.mdpi.com/1999-4915/14/8/1764
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author Kerry Dust
Michael Carpenter
Julie Chih-yu Chen
Chris Grant
Stuart McCorrister
Garret R. Westmacott
Alberto Severini
author_facet Kerry Dust
Michael Carpenter
Julie Chih-yu Chen
Chris Grant
Stuart McCorrister
Garret R. Westmacott
Alberto Severini
author_sort Kerry Dust
collection DOAJ
description The high-risk human papillomaviruses are oncogenic viruses associated with almost all cases of cervical carcinomas, and increasing numbers of anal, and oral cancers. Two oncogenic HPV proteins, E6 and E7, are capable of immortalizing keratinocytes and are required for HPV associated cell transformation. Currently, the influence of these oncoproteins on the global regulation of the host proteome is not well defined. Liquid chromatography coupled with quantitative tandem mass spectrometry using isobaric-tagged peptides was used to investigate the effects of the HPV16 oncoproteins E6 and E7 on protein levels in human neonatal keratinocytes (HEKn). Pathway and gene ontology enrichment analyses revealed that the cells expressing the HPV oncoproteins have elevated levels of proteins related to interferon response, inflammation and DNA damage response, while the proteins related to cell organization and epithelial development are downregulated. This study identifies dysregulated pathways and potential biomarkers associated with HPV oncoproteins in primary keratinocytes which may have therapeutic implications. Most notably, DNA damage response pathways, DNA replication, and interferon signaling pathways were affected in cells transduced with HPV16 E6 and E7 lentiviruses. Moreover, proteins associated with cell organization and differentiation were significantly downregulated in keratinocytes expressing HPV16 E6 + E7. High-risk HPV E6 and E7 oncoproteins are necessary for the HPV-associated transformation of keratinocytes. However their influence on the global dysregulation of keratinocyte proteome is not well documented. Here shotgun proteomics using TMT-labeling detected over 2500 significantly dysregulated proteins associated with E6 and E7 expression. Networks of proteins related to interferon response, inflammation and DNA damage repair pathways were altered.
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spelling doaj.art-7b4d9f3781e04234920d6d8981a9eb992023-11-30T22:39:28ZengMDPI AGViruses1999-49152022-08-01148176410.3390/v14081764Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal DifferentiationKerry Dust0Michael Carpenter1Julie Chih-yu Chen2Chris Grant3Stuart McCorrister4Garret R. Westmacott5Alberto Severini6Department of Medical Microbiology, Faculty of Health Sciences, University of Manitoba, Winnipeg, MB R3E 0W2, CanadaNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3M4, CanadaNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3M4, CanadaNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3M4, CanadaNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3M4, CanadaNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3M4, CanadaDepartment of Medical Microbiology, Faculty of Health Sciences, University of Manitoba, Winnipeg, MB R3E 0W2, CanadaThe high-risk human papillomaviruses are oncogenic viruses associated with almost all cases of cervical carcinomas, and increasing numbers of anal, and oral cancers. Two oncogenic HPV proteins, E6 and E7, are capable of immortalizing keratinocytes and are required for HPV associated cell transformation. Currently, the influence of these oncoproteins on the global regulation of the host proteome is not well defined. Liquid chromatography coupled with quantitative tandem mass spectrometry using isobaric-tagged peptides was used to investigate the effects of the HPV16 oncoproteins E6 and E7 on protein levels in human neonatal keratinocytes (HEKn). Pathway and gene ontology enrichment analyses revealed that the cells expressing the HPV oncoproteins have elevated levels of proteins related to interferon response, inflammation and DNA damage response, while the proteins related to cell organization and epithelial development are downregulated. This study identifies dysregulated pathways and potential biomarkers associated with HPV oncoproteins in primary keratinocytes which may have therapeutic implications. Most notably, DNA damage response pathways, DNA replication, and interferon signaling pathways were affected in cells transduced with HPV16 E6 and E7 lentiviruses. Moreover, proteins associated with cell organization and differentiation were significantly downregulated in keratinocytes expressing HPV16 E6 + E7. High-risk HPV E6 and E7 oncoproteins are necessary for the HPV-associated transformation of keratinocytes. However their influence on the global dysregulation of keratinocyte proteome is not well documented. Here shotgun proteomics using TMT-labeling detected over 2500 significantly dysregulated proteins associated with E6 and E7 expression. Networks of proteins related to interferon response, inflammation and DNA damage repair pathways were altered.https://www.mdpi.com/1999-4915/14/8/1764human papillomavirusE6 proteinE7 proteinproteomicskeratinocytestransformation
spellingShingle Kerry Dust
Michael Carpenter
Julie Chih-yu Chen
Chris Grant
Stuart McCorrister
Garret R. Westmacott
Alberto Severini
Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
Viruses
human papillomavirus
E6 protein
E7 protein
proteomics
keratinocytes
transformation
title Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
title_full Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
title_fullStr Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
title_full_unstemmed Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
title_short Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation
title_sort human papillomavirus 16 e6 and e7 oncoproteins alter the abundance of proteins associated with dna damage response immune signaling and epidermal differentiation
topic human papillomavirus
E6 protein
E7 protein
proteomics
keratinocytes
transformation
url https://www.mdpi.com/1999-4915/14/8/1764
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