Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic
Here we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization reve...
| Main Authors: | , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2018-12-01
|
| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340918315002 |
| _version_ | 1818294752648364032 |
|---|---|
| author | Daria S. Pudova Marat T. Lutfullin Elena I. Shagimardanova Guzel F. Hadieva Leyla Shigapova Anna A. Toymentseva Daniil A. Kabanov Ayslu M. Mardanova Semen G. Vologin Margarita R. Sharipova |
| author_facet | Daria S. Pudova Marat T. Lutfullin Elena I. Shagimardanova Guzel F. Hadieva Leyla Shigapova Anna A. Toymentseva Daniil A. Kabanov Ayslu M. Mardanova Semen G. Vologin Margarita R. Sharipova |
| author_sort | Daria S. Pudova |
| collection | DOAJ |
| description | Here we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization revealed that the strain belongs to the species Lysinibacillus fusiformis. The 4,678,122 bp draft genome consist of 17 scaffolds encoding 4588 proteins and 137 RNAs. Annotation of the genome sequence revealed cellulase and protease encoding genes, genes of adhesion proteins and putative genes responsible for the biosynthesis of antimicrobial metabolites. The Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number NTMQ00000000.1 (https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1). Keywords: Lysinibacillus fusiformis, Probiotic, Cellulase, Illumina MiSeq, In silico DNA-DNA hybridization |
| first_indexed | 2024-12-13T03:36:45Z |
| format | Article |
| id | doaj.art-7f500a3bf39e4c7a8799d860ca9cb307 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-13T03:36:45Z |
| publishDate | 2018-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-7f500a3bf39e4c7a8799d860ca9cb3072022-12-22T00:01:01ZengElsevierData in Brief2352-34092018-12-012125042509Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probioticDaria S. Pudova0Marat T. Lutfullin1Elena I. Shagimardanova2Guzel F. Hadieva3Leyla Shigapova4Anna A. Toymentseva5Daniil A. Kabanov6Ayslu M. Mardanova7Semen G. Vologin8Margarita R. Sharipova9Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia; Corresponding author.Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaTatSRIA - Subdivision of FIC KazanSC of RAS, Kazan, RussiaInstitute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, RussiaHere we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization revealed that the strain belongs to the species Lysinibacillus fusiformis. The 4,678,122 bp draft genome consist of 17 scaffolds encoding 4588 proteins and 137 RNAs. Annotation of the genome sequence revealed cellulase and protease encoding genes, genes of adhesion proteins and putative genes responsible for the biosynthesis of antimicrobial metabolites. The Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number NTMQ00000000.1 (https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1). Keywords: Lysinibacillus fusiformis, Probiotic, Cellulase, Illumina MiSeq, In silico DNA-DNA hybridizationhttp://www.sciencedirect.com/science/article/pii/S2352340918315002 |
| spellingShingle | Daria S. Pudova Marat T. Lutfullin Elena I. Shagimardanova Guzel F. Hadieva Leyla Shigapova Anna A. Toymentseva Daniil A. Kabanov Ayslu M. Mardanova Semen G. Vologin Margarita R. Sharipova Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic Data in Brief |
| title | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
| title_full | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
| title_fullStr | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
| title_full_unstemmed | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
| title_short | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
| title_sort | draft genome sequence data of lysinibacillus fusiformis strain gm isolated from potato phyllosphere as a potential probiotic |
| url | http://www.sciencedirect.com/science/article/pii/S2352340918315002 |
| work_keys_str_mv | AT dariaspudova draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT marattlutfullin draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT elenaishagimardanova draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT guzelfhadieva draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT leylashigapova draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT annaatoymentseva draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT daniilakabanov draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT ayslummardanova draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT semengvologin draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT margaritarsharipova draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic |