Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6
Phomopsis longicolla is the primary cause of Phomopsis seed decay in soybean. This disease severely affects soybean seed quality by reducing seed viability and oil content, altering seed composition, and increasing frequencies of moldy and/or split beans. It is one of the most economically important...
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| Format: | Article |
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Elsevier
2015-03-01
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| Series: | Genomics Data |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213596014001202 |
| _version_ | 1819002962125520896 |
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| author | Shuxian Li Omar Darwish Nadim Alkharouf Benjamin Matthews Pingsheng Ji Leslie L. Domier Ning Zhang Burton H. Bluhm |
| author_facet | Shuxian Li Omar Darwish Nadim Alkharouf Benjamin Matthews Pingsheng Ji Leslie L. Domier Ning Zhang Burton H. Bluhm |
| author_sort | Shuxian Li |
| collection | DOAJ |
| description | Phomopsis longicolla is the primary cause of Phomopsis seed decay in soybean. This disease severely affects soybean seed quality by reducing seed viability and oil content, altering seed composition, and increasing frequencies of moldy and/or split beans. It is one of the most economically important soybean diseases. Here, we report the de novo assembled draft genome sequence of the P. longicolla isolate MSPL10-6, which was isolated from field-grown soybean seed in Mississippi, USA. This study represents the first reported genome sequence of a seedborne fungal pathogen in the Diaporthe–Phomopsis complex. The P. longicolla genome sequence will enable research into the genetic basis of fungal infection of soybean seed and provide information for the study of soybean–fungal interactions. The genome sequence will also be valuable for molecular genetic marker development, manipulation of pathogenicity-related genes and development of new control strategies for this pathogen. |
| first_indexed | 2024-12-20T23:13:26Z |
| format | Article |
| id | doaj.art-8064849a552e4c9c86bfbcf25f4e42f1 |
| institution | Directory Open Access Journal |
| issn | 2213-5960 |
| language | English |
| last_indexed | 2024-12-20T23:13:26Z |
| publishDate | 2015-03-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Genomics Data |
| spelling | doaj.art-8064849a552e4c9c86bfbcf25f4e42f12022-12-21T19:23:41ZengElsevierGenomics Data2213-59602015-03-013C555610.1016/j.gdata.2014.11.007Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6Shuxian Li0Omar Darwish1Nadim Alkharouf2Benjamin Matthews3Pingsheng Ji4Leslie L. Domier5Ning Zhang6Burton H. Bluhm7United States Department of Agriculture, Agricultural Research Service (USDA-ARS), Crop Genetics Research Unit, Stoneville, MS 38776, USADepartment of Computer and Information Sciences, Towson University, MD 21252, USADepartment of Computer and Information Sciences, Towson University, MD 21252, USAUSDA-ARS, Beltsville Agriculture Research Center, Beltsville, MD 21075, USADepartment of Plant Pathology, University of Georgia, Tifton, GA 31794, USAUSDA-ARS, Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USADepartment of Plant Biology Pathology, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USADepartment of Plant Pathology, University of Arkansas, Fayetteville, AR 72701, USAPhomopsis longicolla is the primary cause of Phomopsis seed decay in soybean. This disease severely affects soybean seed quality by reducing seed viability and oil content, altering seed composition, and increasing frequencies of moldy and/or split beans. It is one of the most economically important soybean diseases. Here, we report the de novo assembled draft genome sequence of the P. longicolla isolate MSPL10-6, which was isolated from field-grown soybean seed in Mississippi, USA. This study represents the first reported genome sequence of a seedborne fungal pathogen in the Diaporthe–Phomopsis complex. The P. longicolla genome sequence will enable research into the genetic basis of fungal infection of soybean seed and provide information for the study of soybean–fungal interactions. The genome sequence will also be valuable for molecular genetic marker development, manipulation of pathogenicity-related genes and development of new control strategies for this pathogen.http://www.sciencedirect.com/science/article/pii/S2213596014001202Draft genomePhomopsis longicollaPhomopsis seed decaySequencesSoybean pathogen |
| spellingShingle | Shuxian Li Omar Darwish Nadim Alkharouf Benjamin Matthews Pingsheng Ji Leslie L. Domier Ning Zhang Burton H. Bluhm Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 Genomics Data Draft genome Phomopsis longicolla Phomopsis seed decay Sequences Soybean pathogen |
| title | Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 |
| title_full | Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 |
| title_fullStr | Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 |
| title_full_unstemmed | Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 |
| title_short | Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6 |
| title_sort | draft genome sequence of phomopsis longicolla isolate mspl 10 6 |
| topic | Draft genome Phomopsis longicolla Phomopsis seed decay Sequences Soybean pathogen |
| url | http://www.sciencedirect.com/science/article/pii/S2213596014001202 |
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