Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length,...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1521312 |
| _version_ | 1797640623307620352 |
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| author | Mi-Li Liu Ji-Qing Bai Wan-Lin Dong Ruo-Nan Wang Peng-Bin Dong Ning- Wang Hong-Yan Liu Min-Feng Fang |
| author_facet | Mi-Li Liu Ji-Qing Bai Wan-Lin Dong Ruo-Nan Wang Peng-Bin Dong Ning- Wang Hong-Yan Liu Min-Feng Fang |
| author_sort | Mi-Li Liu |
| collection | DOAJ |
| description | Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 35 tRNA, and 4 rRNA genes were identified. The phylogenetic analysis indicated that A. chensiensis was placed as a sister to the congeneric A. sibirica. |
| first_indexed | 2024-03-11T13:34:29Z |
| format | Article |
| id | doaj.art-806573eb638144c6922919fc379e4715 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:29Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-806573eb638144c6922919fc379e47152023-11-02T15:57:26ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-01321141114210.1080/23802359.2018.15213121521312Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in ChinaMi-Li Liu0Ji-Qing Bai1Wan-Lin Dong2Ruo-Nan Wang3Peng-Bin Dong4Ning- Wang5Hong-Yan Liu6Min-Feng Fang7Ministry of Education, College of Life Sciences, Northwest UniversityShaanxi University of Chinese MedicineMinistry of Education, College of Life Sciences, Northwest UniversityMinistry of Education, College of Life Sciences, Northwest UniversityMinistry of Education, College of Life Sciences, Northwest UniversityMinistry of Education, College of Life Sciences, Northwest UniversityMinistry of Education, College of Life Sciences, Northwest UniversityMinistry of Education, College of Life Sciences, Northwest UniversityAbies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 35 tRNA, and 4 rRNA genes were identified. The phylogenetic analysis indicated that A. chensiensis was placed as a sister to the congeneric A. sibirica.http://dx.doi.org/10.1080/23802359.2018.1521312abies chensiensisplastid genomephylogenetic analysis |
| spellingShingle | Mi-Li Liu Ji-Qing Bai Wan-Lin Dong Ruo-Nan Wang Peng-Bin Dong Ning- Wang Hong-Yan Liu Min-Feng Fang Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China Mitochondrial DNA. Part B. Resources abies chensiensis plastid genome phylogenetic analysis |
| title | Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China |
| title_full | Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China |
| title_fullStr | Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China |
| title_full_unstemmed | Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China |
| title_short | Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China |
| title_sort | characterization of the whole plastid genome sequence of abies chensiensis pinaceae an endangered endemic conifer in china |
| topic | abies chensiensis plastid genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1521312 |
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