Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China
Camellia oleifera, an evergreen small tree or shrub with high medicinal and ecological values, is mainly distributed in subtropical montane regions of China. In this study, complete chloroplast genome was reported for Camellia oleifera in Hainan, China. The results showed that the whole genome was 1...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1407687 |
| _version_ | 1797640766984552448 |
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| author | Wan Zhang Yunlin Zhao Guiyan Yang Yongcheng Tang Zhenggang Xu |
| author_facet | Wan Zhang Yunlin Zhao Guiyan Yang Yongcheng Tang Zhenggang Xu |
| author_sort | Wan Zhang |
| collection | DOAJ |
| description | Camellia oleifera, an evergreen small tree or shrub with high medicinal and ecological values, is mainly distributed in subtropical montane regions of China. In this study, complete chloroplast genome was reported for Camellia oleifera in Hainan, China. The results showed that the whole genome was 156,996 bp in length, including a pair of inverted repeats (IRs) of 26,025 bp, a large single copy (LSC) region of 86,649 bp and a small single copy (SSC) region of 18,297 bp. The genome contained a total of 115 different genes, including 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. Among these genes, eight genes contain a single intron and two genes contain two introns. The total GC content of Camellia oleifera was 37.29%. The maximum likelihood phylogenetic analysis based on 21 chloroplast genomes showed that Camellia oleifera was similar to Camellia danzaiensis. |
| first_indexed | 2024-03-11T13:36:28Z |
| format | Article |
| id | doaj.art-8162cb0417604f3aa2d9847dde07d2f2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:28Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
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| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8162cb0417604f3aa2d9847dde07d2f22023-11-02T15:42:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012284384410.1080/23802359.2017.14076871407687Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, ChinaWan Zhang0Yunlin Zhao1Guiyan Yang2Yongcheng Tang3Zhenggang Xu4Hunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and TechnologyHunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and TechnologyNorthwest A&F UniversityHunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and TechnologyHunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and TechnologyCamellia oleifera, an evergreen small tree or shrub with high medicinal and ecological values, is mainly distributed in subtropical montane regions of China. In this study, complete chloroplast genome was reported for Camellia oleifera in Hainan, China. The results showed that the whole genome was 156,996 bp in length, including a pair of inverted repeats (IRs) of 26,025 bp, a large single copy (LSC) region of 86,649 bp and a small single copy (SSC) region of 18,297 bp. The genome contained a total of 115 different genes, including 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. Among these genes, eight genes contain a single intron and two genes contain two introns. The total GC content of Camellia oleifera was 37.29%. The maximum likelihood phylogenetic analysis based on 21 chloroplast genomes showed that Camellia oleifera was similar to Camellia danzaiensis.http://dx.doi.org/10.1080/23802359.2017.1407687camellia oleiferachloroplast genomenext generation sequencingphylogenetic analysis |
| spellingShingle | Wan Zhang Yunlin Zhao Guiyan Yang Yongcheng Tang Zhenggang Xu Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China Mitochondrial DNA. Part B. Resources camellia oleifera chloroplast genome next generation sequencing phylogenetic analysis |
| title | Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China |
| title_full | Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China |
| title_fullStr | Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China |
| title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China |
| title_short | Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China |
| title_sort | characterization of the complete chloroplast genome sequence of camellia oleifera in hainan china |
| topic | camellia oleifera chloroplast genome next generation sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1407687 |
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