Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle)
Hongkong qumquat (Fortunella hindsii Swingle) is a wild citrus species native to China. In this study, we firstly reporteded its complete chloroplast genome using BGISEQ-500 sequencing. The chloroplast genome is 160,145 bp in size, containing a large single copy region (87,467 bp), a small single co...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1642166 |
| _version_ | 1827773340714008576 |
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| author | Shi-Rong Xu Yong-Yan Zhang Fan Liu Na Tian Dong-Ming Pan Xue-Jun Bei Chun-Zhen Cheng |
| author_facet | Shi-Rong Xu Yong-Yan Zhang Fan Liu Na Tian Dong-Ming Pan Xue-Jun Bei Chun-Zhen Cheng |
| author_sort | Shi-Rong Xu |
| collection | DOAJ |
| description | Hongkong qumquat (Fortunella hindsii Swingle) is a wild citrus species native to China. In this study, we firstly reporteded its complete chloroplast genome using BGISEQ-500 sequencing. The chloroplast genome is 160,145 bp in size, containing a large single copy region (87,467 bp), a small single copy region (18,730 bp), and a pair of IR regions (26,974 bp). The chloroplast genome contains 112 unique genes, including 79 protein-coding genes, 29 tRNAs, and 4 rRNAs. Phylogenetic maximum-likelihood analysis indicated that F. hindsii is closely related to Citrus species. The complete chloroplast genome would be subsequently used for citrus species researches. |
| first_indexed | 2024-03-11T13:21:39Z |
| format | Article |
| id | doaj.art-82b2c4fff2a94156a4c27459635a3dce |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:39Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-82b2c4fff2a94156a4c27459635a3dce2023-11-03T10:28:36ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422612261310.1080/23802359.2019.16421661642166Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle)Shi-Rong Xu0Yong-Yan Zhang1Fan Liu2Na Tian3Dong-Ming Pan4Xue-Jun Bei5Chun-Zhen Cheng6Fujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityYulin Normal UniversityFujian Agriculture and Forestry UniversityHongkong qumquat (Fortunella hindsii Swingle) is a wild citrus species native to China. In this study, we firstly reporteded its complete chloroplast genome using BGISEQ-500 sequencing. The chloroplast genome is 160,145 bp in size, containing a large single copy region (87,467 bp), a small single copy region (18,730 bp), and a pair of IR regions (26,974 bp). The chloroplast genome contains 112 unique genes, including 79 protein-coding genes, 29 tRNAs, and 4 rRNAs. Phylogenetic maximum-likelihood analysis indicated that F. hindsii is closely related to Citrus species. The complete chloroplast genome would be subsequently used for citrus species researches.http://dx.doi.org/10.1080/23802359.2019.1642166fortunella hindsiihongkong kumquatcitrus specieschloroplast genomephylogenetic relationship analysis |
| spellingShingle | Shi-Rong Xu Yong-Yan Zhang Fan Liu Na Tian Dong-Ming Pan Xue-Jun Bei Chun-Zhen Cheng Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) Mitochondrial DNA. Part B. Resources fortunella hindsii hongkong kumquat citrus species chloroplast genome phylogenetic relationship analysis |
| title | Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) |
| title_full | Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) |
| title_fullStr | Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) |
| title_short | Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle) |
| title_sort | characterization of the complete chloroplast genome of the hongkong kumquat fortunella hindsii swingle |
| topic | fortunella hindsii hongkong kumquat citrus species chloroplast genome phylogenetic relationship analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1642166 |
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