Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

The role of immune responses to previously seen endemic coronavirus epitopes in severe acute respiratory coronavirus 2 (SARS-CoV-2) infection and disease progression has not yet been determined. Here, we show that a key characteristic of fatal outcomes with coronavirus disease 2019 (COVID-19) is tha...

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Main Authors: Anna L. McNaughton, Robert S. Paton, Matthew Edmans, Jonathan Youngs, Judith Wellens, Prabhjeet Phalora, Alex Fyfe, Sandra Belij-Rammerstorfer, Jai S. Bolton, Jonathan Ball, George W. Carnell, Wanwisa Dejnirattisai, Christina Dold, David W. Eyre, Philip Hopkins, Alison Howarth, Kreepa Kooblall, Hannah Klim, Susannah Leaver, Lian Ni Lee, César López-Camacho, Sheila F. Lumley, Derek C. Macallan, Alexander J. Mentzer, Nicholas M. Provine, Jeremy Ratcliff, Jose Slon-Compos, Donal Skelly, Lucas Stolle, Piyada Supasa, Nigel Temperton, Chris Walker, Beibei Wang, Duncan Wyncoll, Oxford Protective T Cell Immunology for COVID-19 (OPTIC) consortium, Scottish National Blood Transfusion Service (SNBTS) consortium, Peter Simmonds, Teresa Lambe, John Kenneth Baillie, Malcolm G. Semple, Peter J.M. Openshaw, International Severe Acute Respiratory and emerging Infection Consortium Coronavirus Clinical Characterisation Consortium (ISARIC4C) investigators, Uri Obolski, Marc Turner, Miles Carroll, Juthathip Mongkolsapaya, Gavin Screaton, Stephen H. Kennedy, Lisa Jarvis, Eleanor Barnes, Susanna Dunachie, José Lourenço, Philippa C. Matthews, Tihana Bicanic, Paul Klenerman, Sunetra Gupta, Craig P. Thompson
Format: Article
Language:English
Published: American Society for Clinical investigation 2022-07-01
Series:JCI Insight
Subjects:
Online Access:https://doi.org/10.1172/jci.insight.156372
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author Anna L. McNaughton
Robert S. Paton
Matthew Edmans
Jonathan Youngs
Judith Wellens
Prabhjeet Phalora
Alex Fyfe
Sandra Belij-Rammerstorfer
Jai S. Bolton
Jonathan Ball
George W. Carnell
Wanwisa Dejnirattisai
Christina Dold
David W. Eyre
Philip Hopkins
Alison Howarth
Kreepa Kooblall
Hannah Klim
Susannah Leaver
Lian Ni Lee
César López-Camacho
Sheila F. Lumley
Derek C. Macallan
Alexander J. Mentzer
Nicholas M. Provine
Jeremy Ratcliff
Jose Slon-Compos
Donal Skelly
Lucas Stolle
Piyada Supasa
Nigel Temperton
Chris Walker
Beibei Wang
Duncan Wyncoll
Oxford Protective T Cell Immunology for COVID-19 (OPTIC) consortium
Scottish National Blood Transfusion Service (SNBTS) consortium
Peter Simmonds
Teresa Lambe
John Kenneth Baillie
Malcolm G. Semple
Peter J.M. Openshaw
International Severe Acute Respiratory and emerging Infection Consortium Coronavirus Clinical Characterisation Consortium (ISARIC4C) investigators
Uri Obolski
Marc Turner
Miles Carroll
Juthathip Mongkolsapaya
Gavin Screaton
Stephen H. Kennedy
Lisa Jarvis
Eleanor Barnes
Susanna Dunachie
José Lourenço
Philippa C. Matthews
Tihana Bicanic
Paul Klenerman
Sunetra Gupta
Craig P. Thompson
author_facet Anna L. McNaughton
Robert S. Paton
Matthew Edmans
Jonathan Youngs
Judith Wellens
Prabhjeet Phalora
Alex Fyfe
Sandra Belij-Rammerstorfer
Jai S. Bolton
Jonathan Ball
George W. Carnell
Wanwisa Dejnirattisai
Christina Dold
David W. Eyre
Philip Hopkins
Alison Howarth
Kreepa Kooblall
Hannah Klim
Susannah Leaver
Lian Ni Lee
César López-Camacho
Sheila F. Lumley
Derek C. Macallan
Alexander J. Mentzer
Nicholas M. Provine
Jeremy Ratcliff
Jose Slon-Compos
Donal Skelly
Lucas Stolle
Piyada Supasa
Nigel Temperton
Chris Walker
Beibei Wang
Duncan Wyncoll
Oxford Protective T Cell Immunology for COVID-19 (OPTIC) consortium
Scottish National Blood Transfusion Service (SNBTS) consortium
Peter Simmonds
Teresa Lambe
John Kenneth Baillie
Malcolm G. Semple
Peter J.M. Openshaw
International Severe Acute Respiratory and emerging Infection Consortium Coronavirus Clinical Characterisation Consortium (ISARIC4C) investigators
Uri Obolski
Marc Turner
Miles Carroll
Juthathip Mongkolsapaya
Gavin Screaton
Stephen H. Kennedy
Lisa Jarvis
Eleanor Barnes
Susanna Dunachie
José Lourenço
Philippa C. Matthews
Tihana Bicanic
Paul Klenerman
Sunetra Gupta
Craig P. Thompson
author_sort Anna L. McNaughton
collection DOAJ
description The role of immune responses to previously seen endemic coronavirus epitopes in severe acute respiratory coronavirus 2 (SARS-CoV-2) infection and disease progression has not yet been determined. Here, we show that a key characteristic of fatal outcomes with coronavirus disease 2019 (COVID-19) is that the immune response to the SARS-CoV-2 spike protein is enriched for antibodies directed against epitopes shared with endemic beta-coronaviruses and has a lower proportion of antibodies targeting the more protective variable regions of the spike. The magnitude of antibody responses to the SARS-CoV-2 full-length spike protein, its domains and subunits, and the SARS-CoV-2 nucleocapsid also correlated strongly with responses to the endemic beta-coronavirus spike proteins in individuals admitted to an intensive care unit (ICU) with fatal COVID-19 outcomes, but not in individuals with nonfatal outcomes. This correlation was found to be due to the antibody response directed at the S2 subunit of the SARS-CoV-2 spike protein, which has the highest degree of conservation between the beta-coronavirus spike proteins. Intriguingly, antibody responses to the less cross-reactive SARS-CoV-2 nucleocapsid were not significantly different in individuals who were admitted to an ICU with fatal and nonfatal outcomes, suggesting an antibody profile in individuals with fatal outcomes consistent with an “original antigenic sin” type response.
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spelling doaj.art-842340fbdef543a0831407713fb7ad302022-12-22T03:33:10ZengAmerican Society for Clinical investigationJCI Insight2379-37082022-07-01713Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronavirusesAnna L. McNaughtonRobert S. PatonMatthew EdmansJonathan YoungsJudith WellensPrabhjeet PhaloraAlex FyfeSandra Belij-RammerstorferJai S. BoltonJonathan BallGeorge W. CarnellWanwisa DejnirattisaiChristina DoldDavid W. EyrePhilip HopkinsAlison HowarthKreepa KooblallHannah KlimSusannah LeaverLian Ni LeeCésar López-CamachoSheila F. LumleyDerek C. MacallanAlexander J. MentzerNicholas M. ProvineJeremy RatcliffJose Slon-ComposDonal SkellyLucas StollePiyada SupasaNigel TempertonChris WalkerBeibei WangDuncan WyncollOxford Protective T Cell Immunology for COVID-19 (OPTIC) consortiumScottish National Blood Transfusion Service (SNBTS) consortiumPeter SimmondsTeresa LambeJohn Kenneth BaillieMalcolm G. SemplePeter J.M. OpenshawInternational Severe Acute Respiratory and emerging Infection Consortium Coronavirus Clinical Characterisation Consortium (ISARIC4C) investigatorsUri ObolskiMarc TurnerMiles CarrollJuthathip MongkolsapayaGavin ScreatonStephen H. KennedyLisa JarvisEleanor BarnesSusanna DunachieJosé LourençoPhilippa C. MatthewsTihana BicanicPaul KlenermanSunetra GuptaCraig P. ThompsonThe role of immune responses to previously seen endemic coronavirus epitopes in severe acute respiratory coronavirus 2 (SARS-CoV-2) infection and disease progression has not yet been determined. Here, we show that a key characteristic of fatal outcomes with coronavirus disease 2019 (COVID-19) is that the immune response to the SARS-CoV-2 spike protein is enriched for antibodies directed against epitopes shared with endemic beta-coronaviruses and has a lower proportion of antibodies targeting the more protective variable regions of the spike. The magnitude of antibody responses to the SARS-CoV-2 full-length spike protein, its domains and subunits, and the SARS-CoV-2 nucleocapsid also correlated strongly with responses to the endemic beta-coronavirus spike proteins in individuals admitted to an intensive care unit (ICU) with fatal COVID-19 outcomes, but not in individuals with nonfatal outcomes. This correlation was found to be due to the antibody response directed at the S2 subunit of the SARS-CoV-2 spike protein, which has the highest degree of conservation between the beta-coronavirus spike proteins. Intriguingly, antibody responses to the less cross-reactive SARS-CoV-2 nucleocapsid were not significantly different in individuals who were admitted to an ICU with fatal and nonfatal outcomes, suggesting an antibody profile in individuals with fatal outcomes consistent with an “original antigenic sin” type response.https://doi.org/10.1172/jci.insight.156372ImmunologyInfectious disease
spellingShingle Anna L. McNaughton
Robert S. Paton
Matthew Edmans
Jonathan Youngs
Judith Wellens
Prabhjeet Phalora
Alex Fyfe
Sandra Belij-Rammerstorfer
Jai S. Bolton
Jonathan Ball
George W. Carnell
Wanwisa Dejnirattisai
Christina Dold
David W. Eyre
Philip Hopkins
Alison Howarth
Kreepa Kooblall
Hannah Klim
Susannah Leaver
Lian Ni Lee
César López-Camacho
Sheila F. Lumley
Derek C. Macallan
Alexander J. Mentzer
Nicholas M. Provine
Jeremy Ratcliff
Jose Slon-Compos
Donal Skelly
Lucas Stolle
Piyada Supasa
Nigel Temperton
Chris Walker
Beibei Wang
Duncan Wyncoll
Oxford Protective T Cell Immunology for COVID-19 (OPTIC) consortium
Scottish National Blood Transfusion Service (SNBTS) consortium
Peter Simmonds
Teresa Lambe
John Kenneth Baillie
Malcolm G. Semple
Peter J.M. Openshaw
International Severe Acute Respiratory and emerging Infection Consortium Coronavirus Clinical Characterisation Consortium (ISARIC4C) investigators
Uri Obolski
Marc Turner
Miles Carroll
Juthathip Mongkolsapaya
Gavin Screaton
Stephen H. Kennedy
Lisa Jarvis
Eleanor Barnes
Susanna Dunachie
José Lourenço
Philippa C. Matthews
Tihana Bicanic
Paul Klenerman
Sunetra Gupta
Craig P. Thompson
Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
JCI Insight
Immunology
Infectious disease
title Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
title_full Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
title_fullStr Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
title_full_unstemmed Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
title_short Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
title_sort fatal covid 19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses
topic Immunology
Infectious disease
url https://doi.org/10.1172/jci.insight.156372
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