Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins
In this research, grayling-specific Gyrodactylus salaris Malmberg, 1957 isolates from Baltic Sea basin were collected in Sweden for the first time. Samples were obtained in three drainage systems: Kalixälven (River Kaitum), Ljungan (River Sölvbacka strömmar), and Umeälven (River Juktån). Three molec...
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PeerJ Inc.
2018-07-01
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| author | Agata Mieszkowska Marcin Górniak Agata Jurczak-Kurek Marek S. Ziętara |
| author_facet | Agata Mieszkowska Marcin Górniak Agata Jurczak-Kurek Marek S. Ziętara |
| author_sort | Agata Mieszkowska |
| collection | DOAJ |
| description | In this research, grayling-specific Gyrodactylus salaris Malmberg, 1957 isolates from Baltic Sea basin were collected in Sweden for the first time. Samples were obtained in three drainage systems: Kalixälven (River Kaitum), Ljungan (River Sölvbacka strömmar), and Umeälven (River Juktån). Three molecular markers were analysed: nuclear ITS rDNA (Internal Transcribed Spacer) and ADNAM1 (Anonymous DNA Marker 1), and mitochondrial cox1 gene. As a result, four new mitochondrial haplotypes were identified (III-C1tt, III-C1ttht, IX-A1tt and X-A1tt). The ADNAM1 analyses resulted in revealing two new alleles (WS4 and BS9) and two new genotypes (T6 and T7). T7 seems to be an indicator of ancient crossing between Baltic and White Sea lineages of the parasite which happened during a first 3000-year period of Eemian interglacial about 130,000 years ago in the connection between Baltic and White Sea. Molecular clock estimates were adjusted, revealing the mean substitution rate and the divergence rate among branches of 3.6% (95% HPD: 2.2%–5.2%) and 7.2% per million years, respectively. As a result, cox1 phylogeny rooted with the introgressed haplotypes has been revised and altered in accordance to new data, revealing fourteen equidistant lineages five of which have been excluded from the study. Based on the new phylogenetic approach, including the molecular clock, this work suggests an overall revision of G. salaris phylogeny and attempts at precisely drawing the division of lineages within this polytypic species as well as proposes unification in nomenclature for its strains. |
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| language | English |
| last_indexed | 2024-03-09T06:39:22Z |
| publishDate | 2018-07-01 |
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| spelling | doaj.art-842c6bc832de475982956e828521cdce2023-12-03T10:52:57ZengPeerJ Inc.PeerJ2167-83592018-07-016e516710.7717/peerj.5167Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basinsAgata Mieszkowska0Marcin Górniak1Agata Jurczak-Kurek2Marek S. Ziętara3Department of Molecular Evolution, Faculty of Biology, University of Gdańsk, Gdańsk, PolandDepartment of Molecular Evolution, Faculty of Biology, University of Gdańsk, Gdańsk, PolandDepartment of Molecular Evolution, Faculty of Biology, University of Gdańsk, Gdańsk, PolandDepartment of Molecular Evolution, Faculty of Biology, University of Gdańsk, Gdańsk, PolandIn this research, grayling-specific Gyrodactylus salaris Malmberg, 1957 isolates from Baltic Sea basin were collected in Sweden for the first time. Samples were obtained in three drainage systems: Kalixälven (River Kaitum), Ljungan (River Sölvbacka strömmar), and Umeälven (River Juktån). Three molecular markers were analysed: nuclear ITS rDNA (Internal Transcribed Spacer) and ADNAM1 (Anonymous DNA Marker 1), and mitochondrial cox1 gene. As a result, four new mitochondrial haplotypes were identified (III-C1tt, III-C1ttht, IX-A1tt and X-A1tt). The ADNAM1 analyses resulted in revealing two new alleles (WS4 and BS9) and two new genotypes (T6 and T7). T7 seems to be an indicator of ancient crossing between Baltic and White Sea lineages of the parasite which happened during a first 3000-year period of Eemian interglacial about 130,000 years ago in the connection between Baltic and White Sea. Molecular clock estimates were adjusted, revealing the mean substitution rate and the divergence rate among branches of 3.6% (95% HPD: 2.2%–5.2%) and 7.2% per million years, respectively. As a result, cox1 phylogeny rooted with the introgressed haplotypes has been revised and altered in accordance to new data, revealing fourteen equidistant lineages five of which have been excluded from the study. Based on the new phylogenetic approach, including the molecular clock, this work suggests an overall revision of G. salaris phylogeny and attempts at precisely drawing the division of lineages within this polytypic species as well as proposes unification in nomenclature for its strains.https://peerj.com/articles/5167.pdfGyrodactylus salaris phylogenyMolecular clockGyrodactylosis |
| spellingShingle | Agata Mieszkowska Marcin Górniak Agata Jurczak-Kurek Marek S. Ziętara Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins PeerJ Gyrodactylus salaris phylogeny Molecular clock Gyrodactylosis |
| title | Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins |
| title_full | Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins |
| title_fullStr | Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins |
| title_full_unstemmed | Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins |
| title_short | Revision of Gyrodactylus salaris phylogeny inspired by new evidence for Eemian crossing between lineages living on grayling in Baltic and White sea basins |
| title_sort | revision of gyrodactylus salaris phylogeny inspired by new evidence for eemian crossing between lineages living on grayling in baltic and white sea basins |
| topic | Gyrodactylus salaris phylogeny Molecular clock Gyrodactylosis |
| url | https://peerj.com/articles/5167.pdf |
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