Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae)
In this study, the complete mitogenome of the tigertooth croaker Otolithes ruber was first determined. This mitogenome is 16,589 bp in length, and consists of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.4% A; 29.1% C;...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2016.1247676 |
| _version_ | 1797640879318499328 |
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| author | Chang-Chang Guo Min Liu Jian-Jie Lin Fang-Qun Dai |
| author_facet | Chang-Chang Guo Min Liu Jian-Jie Lin Fang-Qun Dai |
| author_sort | Chang-Chang Guo |
| collection | DOAJ |
| description | In this study, the complete mitogenome of the tigertooth croaker Otolithes ruber was first determined. This mitogenome is 16,589 bp in length, and consists of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.4% A; 29.1% C; 16.1% G and 27.4% T. Sizes of the 22 tRNA genes range from 66 to 74 bp. Four start codons (ACG, CTG, GTG and ATG) and three stop (AGA, TAG and TAA/TA/T) codons were detected in 13 protein-coding genes. In the Bayesian treebased on the complete mitogenomes of 18 species (including O. ruber) from the family Sciaenidae, all nodes were strongly supported. The phylogenetic results suggested that O. ruber was closed to the black-spotted croaker Protonibea diacanthus. |
| first_indexed | 2024-03-11T13:37:27Z |
| format | Article |
| id | doaj.art-84fa1dfedb6b4067a454c6be19e3eca0 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:37:27Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-84fa1dfedb6b4067a454c6be19e3eca02023-11-02T15:42:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-012113213310.1080/23802359.2016.12476761247676Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae)Chang-Chang Guo0Min Liu1Jian-Jie Lin2Fang-Qun Dai3College of Ocean and Earth Sciences, Xiamen UniversityCollege of Ocean and Earth Sciences, Xiamen UniversityFuzhou Marine and Fisheries Technology CenterChinese Academy of Fishery ScienceIn this study, the complete mitogenome of the tigertooth croaker Otolithes ruber was first determined. This mitogenome is 16,589 bp in length, and consists of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.4% A; 29.1% C; 16.1% G and 27.4% T. Sizes of the 22 tRNA genes range from 66 to 74 bp. Four start codons (ACG, CTG, GTG and ATG) and three stop (AGA, TAG and TAA/TA/T) codons were detected in 13 protein-coding genes. In the Bayesian treebased on the complete mitogenomes of 18 species (including O. ruber) from the family Sciaenidae, all nodes were strongly supported. The phylogenetic results suggested that O. ruber was closed to the black-spotted croaker Protonibea diacanthus.http://dx.doi.org/10.1080/23802359.2016.1247676bayesian treemitogenomeotolithesperciformesphylogenetic relationshipsciaenidae |
| spellingShingle | Chang-Chang Guo Min Liu Jian-Jie Lin Fang-Qun Dai Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) Mitochondrial DNA. Part B. Resources bayesian tree mitogenome otolithes perciformes phylogenetic relationship sciaenidae |
| title | Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) |
| title_full | Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) |
| title_fullStr | Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) |
| title_full_unstemmed | Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) |
| title_short | Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae) |
| title_sort | complete mitochondrial genome and the phylogenetic position of the tigertooth croaker otolithes ruber perciformes sciaenidae |
| topic | bayesian tree mitogenome otolithes perciformes phylogenetic relationship sciaenidae |
| url | http://dx.doi.org/10.1080/23802359.2016.1247676 |
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