Augmenting transcriptome assembly by combining de novo and genome-guided tools
Researchers interested in studying and constructing transcriptomes, especially for non-model species, face the conundrum of choosing from a number of available de novo and genome-guided assemblers. None of the popular assembly tools in use today achieve requisite sensitivity, specificity or recovery...
Main Authors: | Prachi Jain, Neeraja M. Krishnan, Binay Panda |
---|---|
Format: | Article |
Language: | English |
Published: |
PeerJ Inc.
2013-08-01
|
Series: | PeerJ |
Subjects: | |
Online Access: | https://peerj.com/articles/133.pdf |
Similar Items
-
The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly
by: Matthew D. MacManes
Published: (2018-08-01) -
Mabs, a suite of tools for gene-informed genome assembly
by: Mikhail I. Schelkunov
Published: (2023-10-01) -
ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs
by: Karl Johan Westrin, et al.
Published: (2024-02-01) -
De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms – a brief guide
by: Daniel J. Jackson, et al.
Published: (2024-06-01) -
Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis
by: Aleksandra M. Kasianova, et al.
Published: (2024-08-01)