The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China
Dipelta yunnanensis (Caprifoliaceae) is a medicinal plant endemic to China. It has been included in the Chinese Species Red List and is also listed as a vulnerable species in the IUCN Red List. In this study, we determined the complete chloroplast (cp) genome sequence of Dipelta yunnanensis using Il...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1551084 |
| _version_ | 1797640543725944832 |
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| author | Fang-Fang Peng Lu Chen Qian Yang Bin Tian Zhan-Lin Liu |
| author_facet | Fang-Fang Peng Lu Chen Qian Yang Bin Tian Zhan-Lin Liu |
| author_sort | Fang-Fang Peng |
| collection | DOAJ |
| description | Dipelta yunnanensis (Caprifoliaceae) is a medicinal plant endemic to China. It has been included in the Chinese Species Red List and is also listed as a vulnerable species in the IUCN Red List. In this study, we determined the complete chloroplast (cp) genome sequence of Dipelta yunnanensis using Illumina paired-end sequencing. The whole cp genome was 155,359 bp in length, consisting of a pair of inverted repeat regions of 23,397 bp, a small single-copy region of 19,098 bp, and a large single-copy region of 89,467 bp. The genome encoded 128 unique genes including 82 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome was 38.4%. Phylogenetic analysis with the reported chloroplast genomes of Dipsacales revealed that D. yunnanensis had a close relationship with Kolkwitzia amabilis. The chloroplast genome sequence of D. yunnanensis offers a useful resource for future conservation genetics and phylogenetic studies. |
| first_indexed | 2024-03-11T13:33:36Z |
| format | Article |
| id | doaj.art-856c57560d864e43b9e852f1c818e4f7 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:36Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-856c57560d864e43b9e852f1c818e4f72023-11-02T16:07:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014151551610.1080/23802359.2018.15510841551084The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in ChinaFang-Fang Peng0Lu Chen1Qian Yang2Bin Tian3Zhan-Lin Liu4Northwest UniversityNorthwest UniversityNorthwest UniversitySouthwest Forestry UniversityNorthwest UniversityDipelta yunnanensis (Caprifoliaceae) is a medicinal plant endemic to China. It has been included in the Chinese Species Red List and is also listed as a vulnerable species in the IUCN Red List. In this study, we determined the complete chloroplast (cp) genome sequence of Dipelta yunnanensis using Illumina paired-end sequencing. The whole cp genome was 155,359 bp in length, consisting of a pair of inverted repeat regions of 23,397 bp, a small single-copy region of 19,098 bp, and a large single-copy region of 89,467 bp. The genome encoded 128 unique genes including 82 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome was 38.4%. Phylogenetic analysis with the reported chloroplast genomes of Dipsacales revealed that D. yunnanensis had a close relationship with Kolkwitzia amabilis. The chloroplast genome sequence of D. yunnanensis offers a useful resource for future conservation genetics and phylogenetic studies.http://dx.doi.org/10.1080/23802359.2018.1551084chloroplast genomedipelta yunnanensisphylogenetic analysis |
| spellingShingle | Fang-Fang Peng Lu Chen Qian Yang Bin Tian Zhan-Lin Liu The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China Mitochondrial DNA. Part B. Resources chloroplast genome dipelta yunnanensis phylogenetic analysis |
| title | The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China |
| title_full | The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China |
| title_fullStr | The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China |
| title_full_unstemmed | The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China |
| title_short | The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China |
| title_sort | complete chloroplast genome of dipelta yunnanensis caprifoliaceae a vulnerable plant in china |
| topic | chloroplast genome dipelta yunnanensis phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1551084 |
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