The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes
Complete mitochondrial genome of the atheriniform fish Pseudomugil furcatus was characterized in this study. The whole mitogenome was 16,753 bp in size and consisted of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs genes, a control region, and origin of light-strand replication. The proportion o...
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| Format: | Article |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1749175 |
| _version_ | 1797639224290181120 |
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| author | Qi Wang Jian Chen Zengliang Miao Youkun Huang Fang Meng Kehua Zhu Bingjian Liu Yifan Liu |
| author_facet | Qi Wang Jian Chen Zengliang Miao Youkun Huang Fang Meng Kehua Zhu Bingjian Liu Yifan Liu |
| author_sort | Qi Wang |
| collection | DOAJ |
| description | Complete mitochondrial genome of the atheriniform fish Pseudomugil furcatus was characterized in this study. The whole mitogenome was 16,753 bp in size and consisted of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs genes, a control region, and origin of light-strand replication. The proportion of coding sequences with a total length of 11,499 bp was 68.64%, which encoded 3869 amino acids. The base composition of the genome was 27.00% for A, 27.31% for C, 15.56% for G, and 30.13% for T. All PCGs started with ATG, ATP8, ND3, ND5, and ND6 ended with TAG, whereas CO2, ATP6, ND4 ended with a single T, the other PCGs commonly ended with TAA. The length of 12S ribosomal RNA was 948 bp, while that of 16S ribosomal RNA was 1744 bp. The control region (D-loop) ranging from 15,774 to 16,753 bp was 980 bp in size. The complete mitochondrial genome sequence provided here could be a useful information for the management of P. furcatus. |
| first_indexed | 2024-03-11T13:14:49Z |
| format | Article |
| id | doaj.art-85b9e20d9f064a2ba2512754498643d0 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:49Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-85b9e20d9f064a2ba2512754498643d02023-11-03T13:50:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521755175610.1080/23802359.2020.17491751749175The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of AtheriniformesQi Wang0Jian Chen1Zengliang Miao2Youkun Huang3Fang Meng4Kehua Zhu5Bingjian Liu6Yifan Liu7National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityComplete mitochondrial genome of the atheriniform fish Pseudomugil furcatus was characterized in this study. The whole mitogenome was 16,753 bp in size and consisted of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs genes, a control region, and origin of light-strand replication. The proportion of coding sequences with a total length of 11,499 bp was 68.64%, which encoded 3869 amino acids. The base composition of the genome was 27.00% for A, 27.31% for C, 15.56% for G, and 30.13% for T. All PCGs started with ATG, ATP8, ND3, ND5, and ND6 ended with TAG, whereas CO2, ATP6, ND4 ended with a single T, the other PCGs commonly ended with TAA. The length of 12S ribosomal RNA was 948 bp, while that of 16S ribosomal RNA was 1744 bp. The control region (D-loop) ranging from 15,774 to 16,753 bp was 980 bp in size. The complete mitochondrial genome sequence provided here could be a useful information for the management of P. furcatus.http://dx.doi.org/10.1080/23802359.2020.1749175pseudomugil furcatusmitochondrial genomeevolutionary relationships |
| spellingShingle | Qi Wang Jian Chen Zengliang Miao Youkun Huang Fang Meng Kehua Zhu Bingjian Liu Yifan Liu The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes Mitochondrial DNA. Part B. Resources pseudomugil furcatus mitochondrial genome evolutionary relationships |
| title | The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes |
| title_full | The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes |
| title_fullStr | The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes |
| title_full_unstemmed | The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes |
| title_short | The complete mitochondrial genome of Pseudomugil furcatus (Atheriniformes: Pseudomugil) and phylogenetic studies of Atheriniformes |
| title_sort | complete mitochondrial genome of pseudomugil furcatus atheriniformes pseudomugil and phylogenetic studies of atheriniformes |
| topic | pseudomugil furcatus mitochondrial genome evolutionary relationships |
| url | http://dx.doi.org/10.1080/23802359.2020.1749175 |
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