Free-Propagator Reweighting Integrator for Single-Particle Dynamics in Reaction-Diffusion Models of Heterogeneous Protein-Protein Interaction Systems
We present a new algorithm for simulating reaction-diffusion equations at single-particle resolution. Our algorithm is designed to be both accurate and simple to implement, and to be applicable to large and heterogeneous systems, including those arising in systems biology applications. We combine th...
Main Authors: | Margaret E. Johnson, Gerhard Hummer |
---|---|
Format: | Article |
Language: | English |
Published: |
American Physical Society
2014-09-01
|
Series: | Physical Review X |
Online Access: | http://doi.org/10.1103/PhysRevX.4.031037 |
Similar Items
-
Interface-resolved network of protein-protein interactions.
by: Margaret E Johnson, et al.
Published: (2013-01-01) -
LncRNA–protein interaction prediction with reweighted feature selection
by: Guohao Lv, et al.
Published: (2023-10-01) -
Coevolutionary Analysis of Protein Subfamilies by Sequence Reweighting
by: Duccio Malinverni, et al.
Published: (2019-11-01) -
Propagation and reaction–diffusion models with free boundaries
by: Yihong Du
Published: (2022-04-01) -
Label-free analysis of adsorbed protein heterogeneity on individual particles, based on single particle collision events
by: Wei Yi, et al.
Published: (2020-02-01)