Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs
The objective of the paper was to classify 50 SNPs (from 17 chromosomes) according to their contribution to the meatness of 293 boars of two breeds (Polish Landrace and Polish Large White) using entropy analysis and standard association analysis. The collected data were classified into two groups (a...
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| Format: | Article |
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Czech Academy of Agricultural Sciences
2014-05-01
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| Series: | Czech Journal of Animal Science |
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| Online Access: | https://cjas.agriculturejournals.cz/artkey/cjs-201405-0004_associations-of-fifty-single-nucleotide-polymorphisms-within-candidate-genes-with-meatness-in-pigs.php |
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| author | A. Borowska T. Szwaczkowski M. Koćwin-Podsiadła S. Kamiński A. Ruść E. Krzęcio-Nieczyporuk |
| author_facet | A. Borowska T. Szwaczkowski M. Koćwin-Podsiadła S. Kamiński A. Ruść E. Krzęcio-Nieczyporuk |
| author_sort | A. Borowska |
| collection | DOAJ |
| description | The objective of the paper was to classify 50 SNPs (from 17 chromosomes) according to their contribution to the meatness of 293 boars of two breeds (Polish Landrace and Polish Large White) using entropy analysis and standard association analysis. The collected data were classified into two groups (according to the official EUROP procedure) and used for entropy analysis. Associations of single genotypes versus their groups (located at single chromosomes) with the trait studied were estimated by the use of the Generalized Linear Model (GLM). Thus meatness was included as a continuous variable. The most important contributions have been estimated by both approaches for the following SNPs: SULT1A1:g.76G>A (SSC3), PKLR:g.384C>T (SSC4), MYOD1:c.566G>C (SSC2), TNNT3:g.153T>C (SSC2), GAA:g.38T>C (SSC12), LDLRR1:c.459A>G (SSC8), MYF6:g.255T>C (SSC5), CAS:g.499A>C (SSC2), PPARGC:c.678T>A (SSC15). Moreover, interactions among some studied loci are suggested, especially for the loci at chromosome 1. |
| first_indexed | 2024-04-10T08:26:14Z |
| format | Article |
| id | doaj.art-86093f70903547759447b276f1eb5a22 |
| institution | Directory Open Access Journal |
| issn | 1212-1819 1805-9309 |
| language | English |
| last_indexed | 2024-04-10T08:26:14Z |
| publishDate | 2014-05-01 |
| publisher | Czech Academy of Agricultural Sciences |
| record_format | Article |
| series | Czech Journal of Animal Science |
| spelling | doaj.art-86093f70903547759447b276f1eb5a222023-02-23T03:33:12ZengCzech Academy of Agricultural SciencesCzech Journal of Animal Science1212-18191805-93092014-05-0159522723710.17221/7403-CJAScjs-201405-0004Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigsA. Borowska0T. Szwaczkowski1M. Koćwin-Podsiadła2S. Kamiński3A. Ruść4E. Krzęcio-Nieczyporuk5Department of Genetics and Animal Breeding, Poznan University of Life Sciences, Poznań, PolandDepartment of Genetics and Animal Breeding, Poznan University of Life Sciences, Poznań, PolandDepartment of Pig Breeding and Meat Science, Siedlce University of Natural Sciences and Humanities, Siedlce, PolandDepartment of Animal Genetics, University of Warmia and Mazury in Olsztyn, Olsztyn, PolandDepartment of Animal Genetics, University of Warmia and Mazury in Olsztyn, Olsztyn, PolandDepartment of Pig Breeding and Meat Science, Siedlce University of Natural Sciences and Humanities, Siedlce, PolandThe objective of the paper was to classify 50 SNPs (from 17 chromosomes) according to their contribution to the meatness of 293 boars of two breeds (Polish Landrace and Polish Large White) using entropy analysis and standard association analysis. The collected data were classified into two groups (according to the official EUROP procedure) and used for entropy analysis. Associations of single genotypes versus their groups (located at single chromosomes) with the trait studied were estimated by the use of the Generalized Linear Model (GLM). Thus meatness was included as a continuous variable. The most important contributions have been estimated by both approaches for the following SNPs: SULT1A1:g.76G>A (SSC3), PKLR:g.384C>T (SSC4), MYOD1:c.566G>C (SSC2), TNNT3:g.153T>C (SSC2), GAA:g.38T>C (SSC12), LDLRR1:c.459A>G (SSC8), MYF6:g.255T>C (SSC5), CAS:g.499A>C (SSC2), PPARGC:c.678T>A (SSC15). Moreover, interactions among some studied loci are suggested, especially for the loci at chromosome 1.https://cjas.agriculturejournals.cz/artkey/cjs-201405-0004_associations-of-fifty-single-nucleotide-polymorphisms-within-candidate-genes-with-meatness-in-pigs.phpentropy analysisporkmeat contentsnp |
| spellingShingle | A. Borowska T. Szwaczkowski M. Koćwin-Podsiadła S. Kamiński A. Ruść E. Krzęcio-Nieczyporuk Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs Czech Journal of Animal Science entropy analysis pork meat content snp |
| title | Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| title_full | Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| title_fullStr | Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| title_full_unstemmed | Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| title_short | Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| title_sort | associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs |
| topic | entropy analysis pork meat content snp |
| url | https://cjas.agriculturejournals.cz/artkey/cjs-201405-0004_associations-of-fifty-single-nucleotide-polymorphisms-within-candidate-genes-with-meatness-in-pigs.php |
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