Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria
Palmaria decipiens (Reinsch) R.W.Ricker is a ecologically important red seaweed restricted to high latitudes of the southern hemisphere. Here, we contribute to the bioinformatics and evolutionary systematics of the Palmariales by performing high throughput sequencing analysis on a specimen of P. dec...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1734494 |
| _version_ | 1827772932096524288 |
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| author | Danilo E. Bustamante Jeffery R. Hughey Martha S. Calderon Andres Mansilla Juan P. Rodriguez Fabio Mendez |
| author_facet | Danilo E. Bustamante Jeffery R. Hughey Martha S. Calderon Andres Mansilla Juan P. Rodriguez Fabio Mendez |
| author_sort | Danilo E. Bustamante |
| collection | DOAJ |
| description | Palmaria decipiens (Reinsch) R.W.Ricker is a ecologically important red seaweed restricted to high latitudes of the southern hemisphere. Here, we contribute to the bioinformatics and evolutionary systematics of the Palmariales by performing high throughput sequencing analysis on a specimen of P. decipiens from the western Antarctic Peninsula. The P. decipiens mitogenome is 26,645 base pairs (bp) in length and contains 49 genes (GenBank accession MN967053) and the plastid genome is 193,007 bp and contains 245 genes (GenBank accession MN967052). The mitogenome and plastid genome of P. decipiens are similar to P. palmata from Japan in pairwise genetic distances (93.71% and 98.14%, respectively), and P. palmata from the Maine, USA (87.45% and 94.57%, respectively). The genomes of P. decipiens showed high gene synteny with P. palmata, however several tRNA differences are documented. Organellar genome content and phylogenetic analyses of P. decipiens supports its placement in the genus Palmaria. |
| first_indexed | 2024-03-11T13:15:44Z |
| format | Article |
| id | doaj.art-8640e1a3092d4173ad3bf6abf2a4042c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:15:44Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8640e1a3092d4173ad3bf6abf2a4042c2023-11-03T13:50:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521327132810.1080/23802359.2020.17344941734494Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus PalmariaDanilo E. Bustamante0Jeffery R. Hughey1Martha S. Calderon2Andres Mansilla3Juan P. Rodriguez4Fabio Mendez5Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de MendozaHartnell CollegeInstituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de MendozaLaboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de MagallanesLaboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de MagallanesLaboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de MagallanesPalmaria decipiens (Reinsch) R.W.Ricker is a ecologically important red seaweed restricted to high latitudes of the southern hemisphere. Here, we contribute to the bioinformatics and evolutionary systematics of the Palmariales by performing high throughput sequencing analysis on a specimen of P. decipiens from the western Antarctic Peninsula. The P. decipiens mitogenome is 26,645 base pairs (bp) in length and contains 49 genes (GenBank accession MN967053) and the plastid genome is 193,007 bp and contains 245 genes (GenBank accession MN967052). The mitogenome and plastid genome of P. decipiens are similar to P. palmata from Japan in pairwise genetic distances (93.71% and 98.14%, respectively), and P. palmata from the Maine, USA (87.45% and 94.57%, respectively). The genomes of P. decipiens showed high gene synteny with P. palmata, however several tRNA differences are documented. Organellar genome content and phylogenetic analyses of P. decipiens supports its placement in the genus Palmaria.http://dx.doi.org/10.1080/23802359.2020.1734494antarcticamacroalgaemitogenomepalmarialesplastid genome |
| spellingShingle | Danilo E. Bustamante Jeffery R. Hughey Martha S. Calderon Andres Mansilla Juan P. Rodriguez Fabio Mendez Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria Mitochondrial DNA. Part B. Resources antarctica macroalgae mitogenome palmariales plastid genome |
| title | Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria |
| title_full | Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria |
| title_fullStr | Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria |
| title_full_unstemmed | Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria |
| title_short | Analysis of the complete organellar genomes of Palmaria decipiens (Palmariaceae, Rhodophyta) from Antarctica confirms its taxonomic placement in the genus Palmaria |
| title_sort | analysis of the complete organellar genomes of palmaria decipiens palmariaceae rhodophyta from antarctica confirms its taxonomic placement in the genus palmaria |
| topic | antarctica macroalgae mitogenome palmariales plastid genome |
| url | http://dx.doi.org/10.1080/23802359.2020.1734494 |
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