ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

Abstract Background Genomics-informed pathogen surveillance strengthens public health decision-making, playing an important role in infectious diseases’ prevention and control. A pivotal outcome of genomics surveillance is the identification of pathogen genetic clusters and their characterization in...

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Bibliographic Details
Main Authors: Verónica Mixão, Miguel Pinto, Daniel Sobral, Adriano Di Pasquale, João Paulo Gomes, Vítor Borges
Format: Article
Language:English
Published: BMC 2023-06-01
Series:Genome Medicine
Subjects:
ReporTree
Genetic clustering
Genomic surveillance
Public health
Automated pipeline
Online Access:https://doi.org/10.1186/s13073-023-01196-1

Internet

https://doi.org/10.1186/s13073-023-01196-1

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