Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of...
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| Format: | Article |
| Language: | English |
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Elsevier
2016-09-01
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| Series: | Genomics Data |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213596016301003 |
| _version_ | 1819160767477317632 |
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| author | Neil T. Miller Danny Fuller M.B. Couger Mark Bagazinski Philip Boyne Robert C. Devor Radwa A. Hanafy Connie Budd Donald P. French Wouter D. Hoff Noha Youssef |
| author_facet | Neil T. Miller Danny Fuller M.B. Couger Mark Bagazinski Philip Boyne Robert C. Devor Radwa A. Hanafy Connie Budd Donald P. French Wouter D. Hoff Noha Youssef |
| author_sort | Neil T. Miller |
| collection | DOAJ |
| description | Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid. |
| first_indexed | 2024-12-22T17:01:41Z |
| format | Article |
| id | doaj.art-87144b814d924fe19cfff5d1c27a6b57 |
| institution | Directory Open Access Journal |
| issn | 2213-5960 |
| language | English |
| last_indexed | 2024-12-22T17:01:41Z |
| publishDate | 2016-09-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Genomics Data |
| spelling | doaj.art-87144b814d924fe19cfff5d1c27a6b572022-12-21T18:19:19ZengElsevierGenomics Data2213-59602016-09-019C15415910.1016/j.gdata.2016.08.004Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potentialNeil T. Miller0Danny Fuller1M.B. Couger2Mark Bagazinski3Philip Boyne4Robert C. Devor5Radwa A. Hanafy6Connie Budd7Donald P. French8Wouter D. Hoff9Noha Youssef10Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Integrative Biology, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United StatesPseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid.http://www.sciencedirect.com/science/article/pii/S2213596016301003Pseudomonas moraviensisDraft genome sequenceDetailed analysisStudent Initiated Microbial Discovery (SIMD) projectMetabolic versatility |
| spellingShingle | Neil T. Miller Danny Fuller M.B. Couger Mark Bagazinski Philip Boyne Robert C. Devor Radwa A. Hanafy Connie Budd Donald P. French Wouter D. Hoff Noha Youssef Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential Genomics Data Pseudomonas moraviensis Draft genome sequence Detailed analysis Student Initiated Microbial Discovery (SIMD) project Metabolic versatility |
| title | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
| title_full | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
| title_fullStr | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
| title_full_unstemmed | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
| title_short | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
| title_sort | draft genome sequence of pseudomonas moraviensis strain devor implicates metabolic versatility and bioremediation potential |
| topic | Pseudomonas moraviensis Draft genome sequence Detailed analysis Student Initiated Microbial Discovery (SIMD) project Metabolic versatility |
| url | http://www.sciencedirect.com/science/article/pii/S2213596016301003 |
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