Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia
Background and Aim: African swine fever (ASF) is a disease that emerged in Indonesia in 2019 in the North Sumatra province and spread rapidly to other areas, such as South Sumatra and Lampung, in 2020. This study aimed to identify the phylogenetics of the ASF virus (ASFV) in the provinces of South S...
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| Format: | Article |
| Language: | English |
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Veterinary World
2023-09-01
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| Series: | Veterinary World |
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| Online Access: | https://www.veterinaryworld.org/Vol.16/September-2023/25.pdf |
| _version_ | 1797676494794784768 |
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| author | Fransiska Panasea Anggy Widagdo Sri Nugroho Sri Handayani Irianingsih Saswiyanti Enny Eko Agus Srihanto |
| author_facet | Fransiska Panasea Anggy Widagdo Sri Nugroho Sri Handayani Irianingsih Saswiyanti Enny Eko Agus Srihanto |
| author_sort | Fransiska Panasea Anggy |
| collection | DOAJ |
| description | Background and Aim: African swine fever (ASF) is a disease that emerged in Indonesia in 2019 in the North Sumatra province and spread rapidly to other areas, such as South Sumatra and Lampung, in 2020. This study aimed to identify the phylogenetics of the ASF virus (ASFV) in the provinces of South Sumatra and Lampung.
Materials and Methods: Nine ASFV isolates collected from the Disease Investigation Center in Lampung were used in this study. The isolates were from ASF cases in South Sumatra and Lampung in 2020-2022. The isolates were sequenced and compared with other ASFV isolates to establish the virus genotype. Sequencing was performed using the complete E183L gene target encoding the p54 protein.
Results: This study showed that ASFV from South Sumatera and Lampung Province belongs to genotype II.
Conclusion: Based on the analysis of the E183L gene, all nine ASFV isolates that originated from South Sumatra and Lampung were identical to other genotype II ASFV isolates from Georgia, China, Vietnam, and Timor Leste. |
| first_indexed | 2024-03-11T22:28:57Z |
| format | Article |
| id | doaj.art-87d3106a65eb465eb70a0949540251dc |
| institution | Directory Open Access Journal |
| issn | 0972-8988 2231-0916 |
| language | English |
| last_indexed | 2024-03-11T22:28:57Z |
| publishDate | 2023-09-01 |
| publisher | Veterinary World |
| record_format | Article |
| series | Veterinary World |
| spelling | doaj.art-87d3106a65eb465eb70a0949540251dc2023-09-23T13:46:26ZengVeterinary WorldVeterinary World0972-89882231-09162023-09-011691985199010.14202/vetworld.2023.1985-1990Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, IndonesiaFransiska Panasea Anggy0https://orcid.org/0000-0002-8455-9834Widagdo Sri Nugroho1https://orcid.org/0000-0002-4984-6731Sri Handayani Irianingsih2https://orcid.org/0000-0003-0652-3518Saswiyanti Enny3https://orcid.org/0009-0001-5502-1357Eko Agus Srihanto4https://orcid.org/0009-0007-8152-4672Disease Investigation Center Lampung, Lampung, Indonesia.Department of Veterinary Public Health, Faculty of Veterinary Medicine, Universitas Gadjah Mada, Yogyakarta, Indonesia.Disease Investigation Center Wates, Yogyakarta, Indonesia. Disease Investigation Center Lampung, Lampung, Indonesia.Disease Investigation Center Lampung, Lampung, Indonesia.Background and Aim: African swine fever (ASF) is a disease that emerged in Indonesia in 2019 in the North Sumatra province and spread rapidly to other areas, such as South Sumatra and Lampung, in 2020. This study aimed to identify the phylogenetics of the ASF virus (ASFV) in the provinces of South Sumatra and Lampung. Materials and Methods: Nine ASFV isolates collected from the Disease Investigation Center in Lampung were used in this study. The isolates were from ASF cases in South Sumatra and Lampung in 2020-2022. The isolates were sequenced and compared with other ASFV isolates to establish the virus genotype. Sequencing was performed using the complete E183L gene target encoding the p54 protein. Results: This study showed that ASFV from South Sumatera and Lampung Province belongs to genotype II. Conclusion: Based on the analysis of the E183L gene, all nine ASFV isolates that originated from South Sumatra and Lampung were identical to other genotype II ASFV isolates from Georgia, China, Vietnam, and Timor Leste.https://www.veterinaryworld.org/Vol.16/September-2023/25.pdfafrican swine fever virus genotypelampungphylogenetic treesouth sumatra |
| spellingShingle | Fransiska Panasea Anggy Widagdo Sri Nugroho Sri Handayani Irianingsih Saswiyanti Enny Eko Agus Srihanto Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia Veterinary World african swine fever virus genotype lampung phylogenetic tree south sumatra |
| title | Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia |
| title_full | Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia |
| title_fullStr | Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia |
| title_full_unstemmed | Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia |
| title_short | Genetic analysis of African swine fever viruses based on E183L (p54) gene, circulating in South Sumatra and Lampung province, Indonesia |
| title_sort | genetic analysis of african swine fever viruses based on e183l p54 gene circulating in south sumatra and lampung province indonesia |
| topic | african swine fever virus genotype lampung phylogenetic tree south sumatra |
| url | https://www.veterinaryworld.org/Vol.16/September-2023/25.pdf |
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