Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening
β-amylase proteins (BAM) are important to many aspects of physiological process such as starch degradation. However, little information was available about the <i>BAM</i> genes in <i>Annona atemoya</i>, an important tropical fruit. Seven <i>BAM</i> genes containin...
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| Format: | Article |
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MDPI AG
2023-06-01
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| Series: | International Journal of Molecular Sciences |
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| Online Access: | https://www.mdpi.com/1422-0067/24/13/10516 |
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| author | Luli Wang Minmin Jing Shuailei Gu Dongliang Li Xiaohong Dai Zhihui Chen Jingjing Chen |
| author_facet | Luli Wang Minmin Jing Shuailei Gu Dongliang Li Xiaohong Dai Zhihui Chen Jingjing Chen |
| author_sort | Luli Wang |
| collection | DOAJ |
| description | β-amylase proteins (BAM) are important to many aspects of physiological process such as starch degradation. However, little information was available about the <i>BAM</i> genes in <i>Annona atemoya</i>, an important tropical fruit. Seven <i>BAM</i> genes containing the conservative domain of glycoside hydrolase family 14 (PF01373) were identified with <i>Annona atemoya</i> genome, and these <i>BAM</i> genes can be divided into four groups. Subcellular localization analysis revealed that <i>AaBAM3</i> and <i>AaBAM9</i> were located in the chloroplast, and <i>AaBAM1.2</i> was located in the cell membrane and the chloroplast. The <i>AaBAMs</i> belonging to Subfamily I contribute to starch degradation have the higher expression than those belonging to Subfamily II. The analysis of the expression showed that <i>AaBAM3</i> may function in the whole fruit ripening process, and <i>AaBAM1.2</i> may be important to starch degradation in other organs. Temperature and ethylene affect the expression of major <i>AaBAM</i> genes in Subfamily I during fruit ripening. These expressions and subcellular localization results indicating β-amylase play an important role in starch degradation. |
| first_indexed | 2024-03-11T01:40:10Z |
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| id | doaj.art-881d5bcbc17a4feb834e1b3929cbc342 |
| institution | Directory Open Access Journal |
| issn | 1661-6596 1422-0067 |
| language | English |
| last_indexed | 2024-03-11T01:40:10Z |
| publishDate | 2023-06-01 |
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| series | International Journal of Molecular Sciences |
| spelling | doaj.art-881d5bcbc17a4feb834e1b3929cbc3422023-11-18T16:39:21ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672023-06-0124131051610.3390/ijms241310516Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit RipeningLuli Wang0Minmin Jing1Shuailei Gu2Dongliang Li3Xiaohong Dai4Zhihui Chen5Jingjing Chen6Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, Chinaβ-amylase proteins (BAM) are important to many aspects of physiological process such as starch degradation. However, little information was available about the <i>BAM</i> genes in <i>Annona atemoya</i>, an important tropical fruit. Seven <i>BAM</i> genes containing the conservative domain of glycoside hydrolase family 14 (PF01373) were identified with <i>Annona atemoya</i> genome, and these <i>BAM</i> genes can be divided into four groups. Subcellular localization analysis revealed that <i>AaBAM3</i> and <i>AaBAM9</i> were located in the chloroplast, and <i>AaBAM1.2</i> was located in the cell membrane and the chloroplast. The <i>AaBAMs</i> belonging to Subfamily I contribute to starch degradation have the higher expression than those belonging to Subfamily II. The analysis of the expression showed that <i>AaBAM3</i> may function in the whole fruit ripening process, and <i>AaBAM1.2</i> may be important to starch degradation in other organs. Temperature and ethylene affect the expression of major <i>AaBAM</i> genes in Subfamily I during fruit ripening. These expressions and subcellular localization results indicating β-amylase play an important role in starch degradation.https://www.mdpi.com/1422-0067/24/13/10516fruit ripeningβ-amylase proteins<i>Annona atemoya</i> |
| spellingShingle | Luli Wang Minmin Jing Shuailei Gu Dongliang Li Xiaohong Dai Zhihui Chen Jingjing Chen Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening International Journal of Molecular Sciences fruit ripening β-amylase proteins <i>Annona atemoya</i> |
| title | Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening |
| title_full | Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening |
| title_fullStr | Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening |
| title_full_unstemmed | Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening |
| title_short | Genome-Wide Investigation of <i>BAM</i> Gene Family in <i>Annona atemoya</i>: Evolution and Expression Network Profiles during Fruit Ripening |
| title_sort | genome wide investigation of i bam i gene family in i annona atemoya i evolution and expression network profiles during fruit ripening |
| topic | fruit ripening β-amylase proteins <i>Annona atemoya</i> |
| url | https://www.mdpi.com/1422-0067/24/13/10516 |
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