A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex
The VIOLA ALBIDA complex is a complicated group with taxonomic problems having continuous leaf variations and composed of taxa related to the following names: Viola albida, V. albida var. takahashii, and V. chaerophylloides. As a first step to understanding the genomic nature of this complex, this s...
| Glavni autori: | , |
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| Format: | Članak |
| Jezik: | English |
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Taylor & Francis Group
2023-06-01
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| Serija: | Mitochondrial DNA. Part B. Resources |
| Teme: | |
| Online pristup: | http://dx.doi.org/10.1080/23802359.2023.2224462 |
| _version_ | 1827772100454121472 |
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| author | Hyeonji Moon Sangtae Kim |
| author_facet | Hyeonji Moon Sangtae Kim |
| author_sort | Hyeonji Moon |
| collection | DOAJ |
| description | The VIOLA ALBIDA complex is a complicated group with taxonomic problems having continuous leaf variations and composed of taxa related to the following names: Viola albida, V. albida var. takahashii, and V. chaerophylloides. As a first step to understanding the genomic nature of this complex, this study identified the whole chloroplast genome of V. albida. The genome is 157,692 bp in length (36.3% of GC content) and contains four subregions: a large single copy region of 86,220 bp, a small single copy region of 17,248 bp, and a pair of inverted regions of 27,112 bp each. An annotation of the gene identifies 111 unique genes, including 77 protein-coding genes, four rRNA genes, and 30 tRNA genes. The phylogenetic analysis of this genome with selected cp genomes from Viola identifies the close relationship between V. albida and V. ulleungdoensis. It is noteworthy that V. chaerophylloides, traditionally recognized as a member of the VIOLA ALBIDA complex, is genetically distant from V. albida and forms a sister group of all other members of the subsection Patellares. Our genome report is expected to serve as a basis for understanding the identity of the VIOLA ALBIDA complex. |
| first_indexed | 2024-03-11T13:04:08Z |
| format | Article |
| id | doaj.art-8844c8c0690c4ddfbdde0a5a30257b85 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:08Z |
| publishDate | 2023-06-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8844c8c0690c4ddfbdde0a5a30257b852023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-06-018667367710.1080/23802359.2023.22244622224462A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complexHyeonji Moon0Sangtae Kim1Department of Biology, Sungshin Women’s UniversityDepartment of Biology, Sungshin Women’s UniversityThe VIOLA ALBIDA complex is a complicated group with taxonomic problems having continuous leaf variations and composed of taxa related to the following names: Viola albida, V. albida var. takahashii, and V. chaerophylloides. As a first step to understanding the genomic nature of this complex, this study identified the whole chloroplast genome of V. albida. The genome is 157,692 bp in length (36.3% of GC content) and contains four subregions: a large single copy region of 86,220 bp, a small single copy region of 17,248 bp, and a pair of inverted regions of 27,112 bp each. An annotation of the gene identifies 111 unique genes, including 77 protein-coding genes, four rRNA genes, and 30 tRNA genes. The phylogenetic analysis of this genome with selected cp genomes from Viola identifies the close relationship between V. albida and V. ulleungdoensis. It is noteworthy that V. chaerophylloides, traditionally recognized as a member of the VIOLA ALBIDA complex, is genetically distant from V. albida and forms a sister group of all other members of the subsection Patellares. Our genome report is expected to serve as a basis for understanding the identity of the VIOLA ALBIDA complex.http://dx.doi.org/10.1080/23802359.2023.2224462chloroplast genomephylogenyviola albidaviola albida complexviolaceae |
| spellingShingle | Hyeonji Moon Sangtae Kim A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex Mitochondrial DNA. Part B. Resources chloroplast genome phylogeny viola albida viola albida complex violaceae |
| title | A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex |
| title_full | A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex |
| title_fullStr | A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex |
| title_full_unstemmed | A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex |
| title_short | A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex |
| title_sort | complete chloroplast genome sequence of viola albida palibin 1899 violaceae a member of viola albida complex |
| topic | chloroplast genome phylogeny viola albida viola albida complex violaceae |
| url | http://dx.doi.org/10.1080/23802359.2023.2224462 |
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