Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)
The first complete mitochondrial genome sequence of Ailia coila from Bangladesh was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. The constructed circular mitogenome for A. coila was 16,565 bp in length which harbored the canonical 13 protein-coding genes, 2...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1627942 |
| _version_ | 1797639775605227520 |
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| author | Md. Jobaidul Alam Sapto Andriyono Soo Rin Lee Mostafa A. R. Hossain A. T. M. Eunus Md. Tawheed Hassan Hyun-Woo Kim |
| author_facet | Md. Jobaidul Alam Sapto Andriyono Soo Rin Lee Mostafa A. R. Hossain A. T. M. Eunus Md. Tawheed Hassan Hyun-Woo Kim |
| author_sort | Md. Jobaidul Alam |
| collection | DOAJ |
| description | The first complete mitochondrial genome sequence of Ailia coila from Bangladesh was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. The constructed circular mitogenome for A. coila was 16,565 bp in length which harbored the canonical 13 protein-coding genes, 22 tRNAs, 2 rRNAs. Two non-coding regions, control region, D-loop (927 bp), and origin of light strand replication, OL (30 bp) were also well conserved in the mitogenome. Among the currently reported mitochondrial genomes in the order Siluriformes, A. coila was most closely related to Eutropiichthys vacha (AB919123) with 85.63% sequence identity. |
| first_indexed | 2024-03-11T13:21:41Z |
| format | Article |
| id | doaj.art-8887262dbead4f2cb043e85ba694a2a8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:41Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8887262dbead4f2cb043e85ba694a2a82023-11-03T10:28:34ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422258225910.1080/23802359.2019.16279421627942Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)Md. Jobaidul Alam0Sapto Andriyono1Soo Rin Lee2Mostafa A. R. Hossain3A. T. M. Eunus4Md. Tawheed Hassan5Hyun-Woo Kim6Pukyong National UniversityPukyong National UniversityPukyong National UniversityBangladesh Agricultural UniversityWorldFishSylhet Agricultural UniversityPukyong National UniversityThe first complete mitochondrial genome sequence of Ailia coila from Bangladesh was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. The constructed circular mitogenome for A. coila was 16,565 bp in length which harbored the canonical 13 protein-coding genes, 22 tRNAs, 2 rRNAs. Two non-coding regions, control region, D-loop (927 bp), and origin of light strand replication, OL (30 bp) were also well conserved in the mitogenome. Among the currently reported mitochondrial genomes in the order Siluriformes, A. coila was most closely related to Eutropiichthys vacha (AB919123) with 85.63% sequence identity.http://dx.doi.org/10.1080/23802359.2019.1627942next-generation sequencingailia coilamitochondrial genomebangladesh |
| spellingShingle | Md. Jobaidul Alam Sapto Andriyono Soo Rin Lee Mostafa A. R. Hossain A. T. M. Eunus Md. Tawheed Hassan Hyun-Woo Kim Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) Mitochondrial DNA. Part B. Resources next-generation sequencing ailia coila mitochondrial genome bangladesh |
| title | Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) |
| title_full | Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) |
| title_fullStr | Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) |
| title_full_unstemmed | Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) |
| title_short | Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae) |
| title_sort | characterization of the complete mitochondrial genome of gangetic ailia ailia coila siluriformes ailiidae |
| topic | next-generation sequencing ailia coila mitochondrial genome bangladesh |
| url | http://dx.doi.org/10.1080/23802359.2019.1627942 |
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