Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium.
In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat--Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by...
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2013-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC3743814?pdf=render |
| _version_ | 1811263231484755968 |
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| author | Chuanliang Deng Lili Bai Shulan Fu Weibo Yin Yingxin Zhang Yuhong Chen Richard R-C Wang Xiangqi Zhang Fangpu Han Zanmin Hu |
| author_facet | Chuanliang Deng Lili Bai Shulan Fu Weibo Yin Yingxin Zhang Yuhong Chen Richard R-C Wang Xiangqi Zhang Fangpu Han Zanmin Hu |
| author_sort | Chuanliang Deng |
| collection | DOAJ |
| description | In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat--Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by DOP-PCR was used as a probe to hybridize with metaphase chromosomes of TAi-27 and Th. intermedium. Results showed that hybridization signals were observed in all regions of a pair of the smallest alien chromosomes and the pericentromeric area of another pair of alien chromosomes in TAi-27, indicating that the probe from microdissected chromosome is species specific. In Th. intermedium, 14 chromosomes had wide and strong hybridization signals distributed mainly on the pericentromere area and 9 chromosomes with narrow and weak signals on the pericentromere area. The remaining chromosomes displayed a very weak or no signal. Sequential FISH/GISH on Th. intermedium chromosomes using the DNAs of microdissected chromosome, Pseudoroegneria spicata (St genome) and pDbH12 (a J(s) genome specific probe) as the probes indicated that the microdissected chromosome belonged to the St genome, three genomes (J(s) , J and St) in Th. intermedium could be distinguished, in which there is no hybridization signal on J genome that is similar to the genome of Th. bessarabicum. Our results showed that the smallest alien chromosomes may represent a truncated chromosome and the repetitive sequence distribution might be similar in different chromosomes within the St genome. However, the repetitive sequence distributions are different within the J(s) genome, within a single chromosome, and among different genomes in Th. intermedium. Our results suggested that chromosome painting could be feasible in some plants and useful in detecting chromosome variation and repetitive sequence distribution in different genomes of polyploidy plants, which is helpful for understanding the evolution of different genomes in polyploid plants. |
| first_indexed | 2024-04-12T19:41:03Z |
| format | Article |
| id | doaj.art-88b14b70807b4f9794c7e08aa309ae46 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-04-12T19:41:03Z |
| publishDate | 2013-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-88b14b70807b4f9794c7e08aa309ae462022-12-22T03:19:05ZengPublic Library of Science (PLoS)PLoS ONE1932-62032013-01-0188e7256410.1371/journal.pone.0072564Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium.Chuanliang DengLili BaiShulan FuWeibo YinYingxin ZhangYuhong ChenRichard R-C WangXiangqi ZhangFangpu HanZanmin HuIn this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat--Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by DOP-PCR was used as a probe to hybridize with metaphase chromosomes of TAi-27 and Th. intermedium. Results showed that hybridization signals were observed in all regions of a pair of the smallest alien chromosomes and the pericentromeric area of another pair of alien chromosomes in TAi-27, indicating that the probe from microdissected chromosome is species specific. In Th. intermedium, 14 chromosomes had wide and strong hybridization signals distributed mainly on the pericentromere area and 9 chromosomes with narrow and weak signals on the pericentromere area. The remaining chromosomes displayed a very weak or no signal. Sequential FISH/GISH on Th. intermedium chromosomes using the DNAs of microdissected chromosome, Pseudoroegneria spicata (St genome) and pDbH12 (a J(s) genome specific probe) as the probes indicated that the microdissected chromosome belonged to the St genome, three genomes (J(s) , J and St) in Th. intermedium could be distinguished, in which there is no hybridization signal on J genome that is similar to the genome of Th. bessarabicum. Our results showed that the smallest alien chromosomes may represent a truncated chromosome and the repetitive sequence distribution might be similar in different chromosomes within the St genome. However, the repetitive sequence distributions are different within the J(s) genome, within a single chromosome, and among different genomes in Th. intermedium. Our results suggested that chromosome painting could be feasible in some plants and useful in detecting chromosome variation and repetitive sequence distribution in different genomes of polyploidy plants, which is helpful for understanding the evolution of different genomes in polyploid plants.http://europepmc.org/articles/PMC3743814?pdf=render |
| spellingShingle | Chuanliang Deng Lili Bai Shulan Fu Weibo Yin Yingxin Zhang Yuhong Chen Richard R-C Wang Xiangqi Zhang Fangpu Han Zanmin Hu Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. PLoS ONE |
| title | Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. |
| title_full | Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. |
| title_fullStr | Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. |
| title_full_unstemmed | Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. |
| title_short | Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. |
| title_sort | microdissection and chromosome painting of the alien chromosome in an addition line of wheat thinopyrum intermedium |
| url | http://europepmc.org/articles/PMC3743814?pdf=render |
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