Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress
Heavy Metals (HMs) are naturally occurring elements with high atomic weight and density. In this study, the metabolite profiling of five different indica rice varieties namely, IR-36, Triguna, IR-64, Muktasree and Ajit exposed to cadmium stress in concentrations from 0 µmolL−1, 25 µmolL−1, 50 µmolL−...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-10-01
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| Series: | Food Chemistry Advances |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2772753X22001630 |
| _version_ | 1797796061395288064 |
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| author | Arpita Paul Susmita Das |
| author_facet | Arpita Paul Susmita Das |
| author_sort | Arpita Paul |
| collection | DOAJ |
| description | Heavy Metals (HMs) are naturally occurring elements with high atomic weight and density. In this study, the metabolite profiling of five different indica rice varieties namely, IR-36, Triguna, IR-64, Muktasree and Ajit exposed to cadmium stress in concentrations from 0 µmolL−1, 25 µmolL−1, 50 µmolL−1 and 100 µmolL−1 has been performed using GC-MS. The score plots of PCA, PLS-DA and OPLS-DA analyses showed clear discrimination between control and Cd-treated seedlings of each variety. GC-MS based metabolomic study specified that HM like cadmium exposure could cause changes in metabolite levels mainly on amino acids, organic acids, sugars and their derivatives, phenolics, nitrogen bases and purine metabolites. These metabolomic responses are related with a reduction in shoot and root growth i.e, their photosynthetic capacity especially in IR-36, Triguna, IR-64 and Ajit variety. Only Muktasree showed a consistent increase in shoot and root length in the course of Cd exposure. Biochemical pathway analyses also demonstrated that exposure to cadmium affected the secondary metabolism pathways along with primary metabolism. |
| first_indexed | 2024-03-13T03:27:28Z |
| format | Article |
| id | doaj.art-891204f6c22b4dfda550c049bdc10dfa |
| institution | Directory Open Access Journal |
| issn | 2772-753X |
| language | English |
| last_indexed | 2024-03-13T03:27:28Z |
| publishDate | 2023-10-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Food Chemistry Advances |
| spelling | doaj.art-891204f6c22b4dfda550c049bdc10dfa2023-06-25T04:44:30ZengElsevierFood Chemistry Advances2772-753X2023-10-012100175Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stressArpita Paul0Susmita Das1Phytochemistry and Pharmacognosy Research Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, West Bengal 700019, IndiaCorresponding author.; Phytochemistry and Pharmacognosy Research Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, West Bengal 700019, IndiaHeavy Metals (HMs) are naturally occurring elements with high atomic weight and density. In this study, the metabolite profiling of five different indica rice varieties namely, IR-36, Triguna, IR-64, Muktasree and Ajit exposed to cadmium stress in concentrations from 0 µmolL−1, 25 µmolL−1, 50 µmolL−1 and 100 µmolL−1 has been performed using GC-MS. The score plots of PCA, PLS-DA and OPLS-DA analyses showed clear discrimination between control and Cd-treated seedlings of each variety. GC-MS based metabolomic study specified that HM like cadmium exposure could cause changes in metabolite levels mainly on amino acids, organic acids, sugars and their derivatives, phenolics, nitrogen bases and purine metabolites. These metabolomic responses are related with a reduction in shoot and root growth i.e, their photosynthetic capacity especially in IR-36, Triguna, IR-64 and Ajit variety. Only Muktasree showed a consistent increase in shoot and root length in the course of Cd exposure. Biochemical pathway analyses also demonstrated that exposure to cadmium affected the secondary metabolism pathways along with primary metabolism.http://www.sciencedirect.com/science/article/pii/S2772753X22001630CadmiumRice varietiesLeaf-shootRootMetabolitesMuktasree |
| spellingShingle | Arpita Paul Susmita Das Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress Food Chemistry Advances Cadmium Rice varieties Leaf-shoot Root Metabolites Muktasree |
| title | Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress |
| title_full | Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress |
| title_fullStr | Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress |
| title_full_unstemmed | Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress |
| title_short | Gas Chromatography Mass Spectrometry based metabolomic investigation on five different rice cutivars (Oryza sativa L.) under different induced Cadmium stress |
| title_sort | gas chromatography mass spectrometry based metabolomic investigation on five different rice cutivars oryza sativa l under different induced cadmium stress |
| topic | Cadmium Rice varieties Leaf-shoot Root Metabolites Muktasree |
| url | http://www.sciencedirect.com/science/article/pii/S2772753X22001630 |
| work_keys_str_mv | AT arpitapaul gaschromatographymassspectrometrybasedmetabolomicinvestigationonfivedifferentricecutivarsoryzasativalunderdifferentinducedcadmiumstress AT susmitadas gaschromatographymassspectrometrybasedmetabolomicinvestigationonfivedifferentricecutivarsoryzasativalunderdifferentinducedcadmiumstress |